Gene Information

Name : PA2050 (PA2050)
Accession : NP_250740.1
Strain : Pseudomonas aeruginosa PAO1
Genome accession: NC_002516
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2244492 - 2244998 bp
Length : 507 bp
Strand : +
Note : Product name confidence: class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene)

DNA sequence : 
ATGGGCATGGATCAGACACGCAATCGCCTCGTCGGCCTGATGTTCCAGAACGACTATTCCTGGCTGAGCGGGCGCCTGCG
GCGCTACCTCGGCTGCCCCCACAGCGCCGAGGACATCGCCTCGGAAACCTTCCTCAAGGTCCTTGCCCTGCCGGACCCGG
CAAGCATCCGCGAGCCGCGCGCGCTGCTCACCACCATCGCCCGCCGGCTGATGTACGACGGCTGGCGGCGCCAGGACCTG
GAACGCGCCTACCTGGAAAGCCTGGCCGGGCTTCCGGAGGCCCTCGCGCCGTCCGCCGAGGAGCAGGCCCAGGTGGTGGA
AACCCTGCTGCGCCTGGAGCGCATGCTCGCCGGGCTGTCGCCGAAGGCCCGCGCCGCCTTCATCCATAGCCAGATCGGCG
GACTGACCTACGTGGAGATCGCCTGCTTGCTGGAGGTTTCCGTCAGCCGCATCCACCAGTACATGGTCGAGGGCTTCAAG
CAGTGCTACCAGGTGCTTGCCGAATGA

Protein sequence : 
MGMDQTRNRLVGLMFQNDYSWLSGRLRRYLGCPHSAEDIASETFLKVLALPDPASIREPRALLTTIARRLMYDGWRRQDL
ERAYLESLAGLPEALAPSAEEQAQVVETLLRLERMLAGLSPKARAAFIHSQIGGLTYVEIACLLEVSVSRIHQYMVEGFK
QCYQVLAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 4e-28 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PA2050 NP_250740.1 RNA polymerase sigma factor VFG1049 Protein 2e-28 46