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Name : rpoB (PA4270) Accession : NP_252960.1 Strain : Pseudomonas aeruginosa PAO1 Genome accession: NC_002516 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 4776544 - 4780617 bp Length : 4074 bp Strand : - Note : Product name confidence: class 2 (High similarity to functionally studied protein) DNA sequence : ATGGCTTACTCATACACTGAGAAAAAACGTATCCGCAAGGACTTTAGCAAGTTGCCGGACGTCATGGATGTGCCGTATTT GCTGGCCATCCAGCTGGATTCCTATCGCGAATTCCTGCAGGCTGGCGCAACCAAGGAGCAGTTCCGCGATGTCGGTCTGC ACGCGGCCTTCAAGTCCGTTTTCCCGATTATCAGCTATTCCGGCAATGCTGCCCTGGAATACGTCGGCTACCGTCTGGGT GAGCCGGCATTCGATGTCAAGGAGTGCGTGCTGCGCGGCGTGACCTTCGCCGTACCGCTGCGCGTGAAAGTTCGCCTGAT CATCTTCGACCGCGAGTCGTCGAACAAGGCGATCAAGGACATCAAGGAACAAGAAGTCTACATGGGGGAAATCCCCCTGA TGACCGAGAACGGTACCTTCATCATCAACGGTACCGAGCGTGTCATCGTCTCCCAGCTGCACCGTTCCCCGGGCGTGTTC TTCGACCACGACCGTGGCAAGACCCACAGCTCCGGCAAGCTGCTGTACTCCGCGCGGATCATTCCTTACCGCGGTTCCTG GCTGGACTTCGAGTTCGATCCGAAGGACTGCGTGTTCGTCCGTATCGACCGTCGCCGCAAGCTGCCGGCCTCGGTACTGC TGCGCGCGCTCGGCTACAGCACGGAAGAGATCCTCAACGCCTTCTACGCGACCAACGTCTTCCACATCAAGGGCGAGACC CTGAACCTGGAACTGGTCCCGCAGCGCCTGCGCGGTGAAGTCGCGAGCATCGACATCAAGGATGGCAGCGGCAAGGTGAT CGTGGAGCAGGGGCGTCGTATCACTGCCCGCCACATCAACCAGCTGGAAAAGGCTGGCGTGAGCCAGCTGGAAGTGCCGT TCGACTACCTGATCGGCCGTACCATCGCCAAGGCGATCGTGCATCCGGCTACCGGCGAGATCATCGCCGAGTGCAACACC GAGCTGACCCTCGACCTCCTGGCCAAGGTGGCCAAGGCCCAGGTCGTGCGCATCGAGACCCTGTACACCAACGACATCGA CTGCGGTCCGTTCATCTCCGACACCCTGAAGATCGACAACACCAGCAACCAGCTGGAAGCCCTGGTCGAGATCTACCGGA TGATGCGTCCGGGCGAGCCGCCGACCAAGGAAGCTGCCGAGACCCTGTTCGGCAACCTGTTCTTCAGCGCCGAGCGTTAC GACCTGTCGGCCGTAGGCCGGATGAAGTTCAACCGCCGTATCGGTCGTACCGAGATCGAAGGTCCGGGCGTCCTGAGCAA GGAAGACATCATCGATGTGCTCAAGACCCTCGTCGACATCCGTAACGGCAAGGGCATCGTCGATGACATCGACCACCTGG GCAACCGTCGTGTCCGTTGCGTCGGCGAAATGGCCGAGAACCAGTTCCGCGTGGGCCTGGTGCGTGTCGAGCGCGCGGTC AAGGAACGCCTGTCCATGGCCGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAACGCCAAGCCGGTGGCTGCCGCGAT CAAGGAGTTCTTCGGTTCGAGCCAGCTGTCGCAGTTCATGGACCAGAACAACCCGCTTTCCGAGATCACCCACAAGCGCC GCGTCTCCGCGCTCGGCCCGGGCGGTCTGACCCGTGAGCGTGCGGGCTTCGAGGTTCGTGACGTACACCCGACCCACTAC GGCCGCGTGTGCCCGATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCCCTGGCGACCTACGCCCGCACCAA CAAGTACGGCTTCCTCGAGAGCCCGTACCGCGTGGTCAAGGACAGCCTGGTAACCGACGAGATCGTGTTCCTGTCGGCGA TCGAAGAAGCCGACCACGTCATCGCCCAGGCTTCGGCGACCCTCAACGAGAAGGGTCAACTGGTGGACGAGCTGGTGGCC GTGCGTCACCTGAACGAATTCACCGTGAAGGCGCCGGAAGACGTGACCCTGATGGACGTGTCGCCGAAGCAGGTCGTTTC CGTCGCTGCCTCGCTGATTCCGTTCCTCGAGCACGATGACGCCAACCGCGCACTCATGGGCTCGAACATGCAGCGTCAGG CCGTGCCGACCCTGCGTGCCGACAAGCCGCTGGTGGGTACCGGCATGGAGCGCAACGTGGCGCGCGACTCCGGCGTCTGC GTCGTGGCTCGCCGTGGCGGTGTGATCGACTCGGTCGATGCCAGCCGTGTCGTGGTTCGCGTGGCGGATGACGAAGTCGA GACCGGCGAAGCGGGTGTCGACATCTACAACCTGACCAAGTACACTCGTTCCAACCAGAACACCTGCATCAACCAGCGTC CGCTGGTGAGCAAGGGTGACGTGGTCGCGCGCGGCGACATCCTGGCCGACGGTCCGTCCACCGACATGGGCGAACTGGCC CTGGGCCAGAACATGCGCGTAGCGTTCATGCCCTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGCGT GGTCCAGGAAGATCGTTTCACCACGATCCACATCCAGGAACTGACCTGCGTCGCTCGTGACACCAAGCTCGGCCCAGAGG AAATCACCGCGGACATCCCGAACGTGGGCGAGGCCGCGCTGAACAAGCTGGACGAAGCCGGTATCGTCTACGTCGGCGCC GAAGTGCAGGCCGGCGACATCCTGGTCGGCAAGGTCACTCCGAAAGGCGAGACCCAGCTGACTCCGGAAGAGAAGCTGCT GCGCGCGATCTTCGGTGAGAAGGCGTCCGACGTGAAGGACACCTCCCTGCGTGTGCCGACCGGCACCAAGGGTACCGTCA TCGACGTTCAGGTCTTCACCCGCGACGGCGTCGAGCGCGATTCCCGCGCGCTGTCCATCGAGAAGATGCAACTCGACCAG ATCCGCAAGGACCTGAACGAAGAGTTCCGCATCGTCGAAGGCGCGACCTTCGAGCGTCTGCGTGCCGCCCTGGTCGGTGC CAAGGCTGAAGGTGGCCCGGCGCTGAAGAAGGGCACGGAGATCACCGACGACTACCTCGACGGTCTCGAGCGCGGCCAGT GGTTCAAGCTGCGCATGGCCGACGACGCCCTGAACGAACAGCTGGAGAAGGCCCAGGCCTACATCAGCGATCGTCGCCAG CTCCTGGACGACAAGTTCGAGGACAAGAAGCGCAAGCTGCAGCAGGGCGACGACCTGGCTCCGGGCGTGCTGAAGATCGT CAAGGTCTACCTGGCGATCAAGCGTCGCATCCAGCCGGGCGACAAGATGGCCGGCCGTCACGGTAACAAGGGTGTGGTCT CGGTGATCATGCCGGTGGAAGACATGCCGCACGATGCCAACGGCACCCCGGTCGACATCGTCCTCAACCCGCTGGGCGTA CCGTCGCGTATGAACGTCGGTCAGATCCTCGAAACCCACCTGGGCCTCGCGGCCAAGGGGCTGGGCGAGAAGATCAACCG CATGCTCGAAGAGCAGCGCAAGGTCGCCGAACTGCGTAAGTTCCTGCACGAGATCTACAACGAGATCGGCGGTCGCGAGG AAAACCTCGACGAGCTGGGCGACAACGAGATCCTCGCGCTGGCCAAGAACCTGCGCGGTGGCGTACCGATGGCGACCCCG GTGTTCGATGGCGCCAAGGAACGCGAGATCAAGGCCATGCTGAAGCTGGCCGACCTGCCGGAAAGCGGCCAGATGCGTCT GTTCGACGGCCGTACCGGCAACCAGTTCGAGCGTCCGACCACCGTCGGCTACATGTACATGCTCAAGCTGAACCACCTGG TGGACGACAAGATGCACGCCCGTTCCACCGGCTCGTACAGCCTGGTTACCCAGCAGCCGCTGGGTGGTAAGGCACAGTTC GGTGGTCAGCGCTTCGGTGAGATGGAGGTGTGGGCGCTGGAAGCCTATGGCGCGGCGTACACCCTGCAGGAAATGCTGAC GGTCAAGTCGGACGACGTGAACGGCCGGACCAAGATGTACAAGAACATCGTGGACGGCGATCACCGCATGGAGGCCGGCA TGCCCGAGTCCTTCAACGTTCTGATCAAAGAGATCCGTTCGCTCGGCATCGACATCGAACTGGAAACCGAATAA Protein sequence : MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLG EPAFDVKECVLRGVTFAVPLRVKVRLIIFDRESSNKAIKDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVF FDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGET LNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVSQLEVPFDYLIGRTIAKAIVHPATGEIIAECNT ELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERY DLSAVGRMKFNRRIGRTEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV KERLSMAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHY GRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVA VRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC VVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDVVARGDILADGPSTDMGELA LGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGA EVQAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDQ IRKDLNEEFRIVEGATFERLRAALVGAKAEGGPALKKGTEITDDYLDGLERGQWFKLRMADDALNEQLEKAQAYISDRRQ LLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGV PSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATP VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 75 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 75 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 100 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 75 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 75 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 75 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 75 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 75 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 74 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 74 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 74 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 74 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 74 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 73 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 73 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 73 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 69 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 68 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 48 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 47 |
| rpoB | NP_252960.1 | DNA-directed RNA polymerase subunit beta | AE016830.1.gene3155. | Protein | 0.0 | 46 |
