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Name : secD (PM0227) Accession : NP_245164.1 Strain : Pasteurella multocida Pm70 Genome accession: NC_002663 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 253474 - 255324 bp Length : 1851 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGTTAAATCGTTACCCTCTTTGGAAGAACCTAATGGTGATCCTCGTGATCGCCATTGGCGTTTTATACTCTCTTCCAAA TCTTTATGGTGAAGATCCCGCAGTGCAAATTTCTGGCACCCGAGGACAAGAAGCCAATGCTCAAATATTTAGTGAAGTCC AAACTTTATTAAATCAAAACAACTTAGAAACCAAATCGATTATTCTAGAAAATGGCTCTATTCTTGCTCGTTTTCATAAT ACCGATGATCAATTACTTGCCAAAGATAAACTGTCTGAAAAATTAGGTAATGGCTATTCTGTTGCCTTAAACCTTGCGCC GGCAACACCGAAGTGGCTCACTTCAGTTGGCGCTTATCCGATGAAATGGGGATTAGACTTACGTGGTGGTGTCCGCTTCT TAATGGAAGTGGATATGAAATCGGCTTTACATAAACGTCAAGAACAATTACAAGACAACCTGCGTACCCAATTACGTAAA GAAAAATATCAGTATACAGGGATTAAATCCGCTGAAAATTTCAGTACGCTCGTCACCTTATTAAAACCAGAACAACTGGA TGAGGTACAACGTTTTTTACGTAAACAGCATCATAATTTAGAGATTAAAAGCGTTTCAGACAATACCTTAGCGTTAACCC TTTCTGAAGCCGCACTCAATGAATCTCGTGAAAGTGCTATTGAGCAAAACTTGACGATTTTACGTAAACGTGTGTCTGAA TTGGGTGTGTCTGAAGCAGTGATTCAACGTCAAGGCGCTGAACGTATTGTGGTTGAGTTACCTGGTGTACAAGATACCGC GCGTGCGAAAGAAATCCTAGGCGCAACTGCGACGTTGGAATTCCGTTTAGTCAATGAAAATGTCAATCTTGATTCGGCAA CACGCGGCTTTGTACCAAATGATTCAGAAGTAAAATTGGATCGCAATGGTCGCCCAGTTGTCCTGTATAAACGTGCCGTA CTCGGTGGTGAACATATTACTAACGCCAGTTCAGGGCTAGATCAACAAACTTCCCGTCCGCAAGTCAGCGTGACCTTAGA CAGTGAAGGTGGCGAGATCATGTCACAAGCTACCCGTTTGAATCTGAAAAAACCGATGGCGACGTTATATGTTGAATATA AAGACAGCGGTAAGAAAGATGAAAATGGCAAAGCGATCTTAGAAAAACACGAGGAAGTCATTAACGTCGCGACGATTCAA GGCCGTTTTGGTAGCCAATTCCAAATTACCGGCATTGATAGCCCTGCAGAAGCGTTAAATCTTGCAGTGTTACTCCGTTC TGGTGCCTTAATTGCCCCCATTCAAATTGTCGAAGAACGCACGATTGGACCATCACTGGGGGCTGAAAACGTACGCCAAG GTTTAGAGGCCAGTTTCTGGGGCTTACTCGCCGTCATTATTTTCATGACACTTTACTATCGTAAATTTGGTTTGATCGCT AATATTGCGTTGATTGCGAATATTGTTTTAGTGGTTGGTTTAATGTCATTACTGCCGGGCGCCACCTTGTCAATGCCAGG AATTGCCGGGATCGTGCTATCCGTTGGGATGTCCATTGATGCTAACGTACTGATCTTTGAACGTATCAAAGAAGAAATCC GTAATGGTAGACCTATTCAGCAAGCCATTCACGAAGGCTATTCTGGCGCATTCACCAGTATTTTTGATGCAAACTTAACC ACCATTCTCACCTCCGTGATTCTTTATGCCGTGGGTGCAGGTCCAGTGAAAGGCTTTGCAATTACACTTGCCCTTGGGGT AGGGATTTCCATGTTTACCGCCATTGTCGGCACACGTGCAATCGTCAACTTCTTGTACGGCGGTAAACGTATAAACAAAT TGTCAATTTAG Protein sequence : MLNRYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGTRGQEANAQIFSEVQTLLNQNNLETKSIILENGSILARFHN TDDQLLAKDKLSEKLGNGYSVALNLAPATPKWLTSVGAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRK EKYQYTGIKSAENFSTLVTLLKPEQLDEVQRFLRKQHHNLEIKSVSDNTLALTLSEAALNESRESAIEQNLTILRKRVSE LGVSEAVIQRQGAERIVVELPGVQDTARAKEILGATATLEFRLVNENVNLDSATRGFVPNDSEVKLDRNGRPVVLYKRAV LGGEHITNASSGLDQQTSRPQVSVTLDSEGGEIMSQATRLNLKKPMATLYVEYKDSGKKDENGKAILEKHEEVINVATIQ GRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYRKFGLIA NIALIANIVLVVGLMSLLPGATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLT TILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 5e-115 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 8e-116 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 8e-115 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 8e-115 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 8e-115 | 46 |
