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Name : secD (BB1360) Accession : NP_887906.1 Strain : Bordetella bronchiseptica RB50 Genome accession: NC_002927 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1453718 - 1455598 bp Length : 1881 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTATCCCCTCTGGAAATACATCACGGTCCTGGTTGCGGTCGTCATCGGCCTGCTCTATACCCTGCCCAACTT CTACGGCGAGTCCCCCGCCGTCCAGGTCTCGTCCGCCAAGGCGACGATCAAGGTCGACCAGGCCACGCTGGAACAGGTCC AGCAGATCATCGAAAACGCCCAGTTGCCGGCCGACAGCGTCTACTACGAGCAGAACGGCACGCTGGGCACGGTGCGCGCG CGCTTTCCGTCCACCGACGTGCAGCTGCAGGCGCGCGACCTGATCGACCGCACGCTCAACACCGTGGCCGGCGACCCCCA CTACACCGTGGCGCTGAACCTGCTGCCCGCCTCGCCGCCCTGGATGCGGTCGCTGGGCTGGTTCGAGCCCAAGCCCATGT ACCTGGGCCTGGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTCGACATGCAGGGCGCCCTGACGGCGCGCTATGAC TCGCTGGTGGCCGACGTGCGCAGCGCGCTGCGCGACCAGAAGGCCGAAGTCGGCGCCATCGAGCGCTCGGGCCAGTCGGT CGTGGCCACTTTCGCCACCGCCGAACAACGCGACCGCGCCCGCGACGTGCTGCGCTCGCGCCTGCCCGACCTGCAGTTCA CCGAAACCAGCGACGGCGGCAAGCTGCAACTGACGGGCATGCTCAACCCGGCCGCGGTCACCCGCGTGCAGGACACCGCC CTCAAGCAGAACATCAACACCCTGCACAACCGCATCAACGAGCTGGGCGTGGCCGAGCCGGTCATCCAGCAGCAAGGCGC CGACCGCATCATCGTGCAGCTGCCCGGCGTGCAGGACGTGGCCAAGGCCAAGGAGCTGCTGGGCCGCACCGCCACGCTCG AGATCCGCATGGTCGACGACAGCCCGGCGGCGCAATCGGCCCTGGCCGCCGGCAGCGTGCCGTTCGGCCTGGAGCGCTAC ACCGACCGCGACGGCCGCCCCCTGCTGGTGCGCCGCCAGGTGGTGCTGACCGGCGAAAACCTGCAGGACGCCCAGCCCGG CCGCGATGGCCAGACCCAGCAGCCGGCCGTGCACCTGACGCTGGACTCCAAGGGCGCGCGCATCTTCCGCGACGTCACGC GCGACAACATCGGCAAGCGCATGGCCATCCTGCTGTTCGAGAACGGCAAGGGCGAAGTCGTCACCGCGCCGGTCATCCGC AGCGAAATCGGCGGCGGCCAGGTGCAGATCTCGGGCAGCATGACCGCCGAGGAAGCTGCCGACACCGCGCTGCTGCTGCG CGCCGGCGCGCTGGCCGCGCCCATGTCCATCATCGAGGAGCGCACCATCGGCCCCAGCCTGGGCGCGGACAACATCGCCA AGGGTTTCTACTCGACGCTGTATGGCTTCATCGCGATCGCCATCTTCATCATCGTGTACTACCACCTGTTCGGCATCTTC TCGACCATCGGCCTGACGGTCAACGTGCTGCTGCTGCTGGCGCTGCTGTCGATGCTGCAGGCAACCCTGACCCTGCCCGG CATCGCGGCCATCGCCCTGACCCTGGGCATGGCCATCGACGCCAACGTGCTCATCAACGAGCGCATCCGCGAAGAGCTGC GCAACGGCGCCACGCCGCAACAGGCCATCCACCATGGCTTCGAGCGCGCGTGGGGCACCATCCTGGACTCCAACCTCACC ACGCTGATCGTCGGCCTGGCGCTGCTGGCGTTCGGCTCCGGCCCGATCCGCGGCTTTGCCGTGGTGCACTGCCTGGGCAT CGTCACCTCGATGTTCTCGTCGGTGGTGGGCGTGCGCGCGCTGGCCAACCTCTGGTACGGCCGCAAGAAGAAGCTGTCGA GCATTTCCATCGGCACCGTCTGGAAACCCAAGGCAAACTGA Protein sequence : MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENAQLPADSVYYEQNGTLGTVRA RFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYD SLVADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERY TDRDGRPLLVRRQVVLTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVIR SEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAIAIFIIVYYHLFGIF STIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLT TLIVGLALLAFGSGPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-91 | 42 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-91 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-91 | 42 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-91 | 42 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-91 | 41 |
