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Name : glcD (BB1938) Accession : NP_888483.1 Strain : Bordetella bronchiseptica RB50 Genome accession: NC_002927 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 2073704 - 2075203 bp Length : 1500 bp Strand : + Note : ortholog of Bordetella pertussis (BX470248) BP2905 DNA sequence : ATGAACACCTTGGTGGATGCCGGTTTTTCGCCCAGGCGGGAAGGCTTTGCGCCCCAGCCGCTGATCGAGGCCTTGCTGTC GATACTGCCCGCGCATTGCGTGCTGCATCGCGAAGAGGACACACGCCCGTACGAGTGCGACGGCCTGTCGCTGTACCGGG CGCTGCCGGCGGTGGTGGCCCTGCCGGAAGACGAGGCGCAGGTGCGCGCCATCATGCAGCTGTGCAAGCGCATGAACGTG CCGATCGTGGCGCGCGGCGCGGGGACCGGTCTGTCGGGCGGGGCCATGCCGCACGCGCAGGGCGTGCTGCTGGGGCTGTC CAAGCTCAACCGTATCAAGCGCATAGACCCCGCCGGCGGCACGGCCGTGGTCGAGCCGGGCGTGCGCAACCTGGCCATTT CCGAAGCCGCCGCGCCTTACGGGCTTTACTACGCCCCGGACCCATCCAGCCAGATCGCCTGTTCGATCGGCGGCAACGTG GCCGAGAACTCCGGCGGCGTACATTGCCTCAAGTACGGGCTGACGGTACACAACGTGCTGCGCGTGCGTGTGGTGACCAT CGACGGGGAGATCGTCGAGCTCGGCTCGGAAGCGCCCGATGCGCCCGGCCTGGACCTGCTGTCGGTGTTCGTCGGCTCCG AAGGCATGCTGGGCGTGGTGACCGAAATCACGGTCAAGCTGATTCCCTCGCCGGCCTGCGCGCAAGTGGTCATGGCCAGC TTCGCCAGCGTCGAAGCGGCGGGCAACGCGGTCACGCAGATCATTGCCGCAGGCCTGATCCCGGCCGGGCTGGAGATGAT GGACCGCCAGGCGGTCCATATGGTCGAGCCCTTCGTGCAGGCGGGCTACGACCTCCAGGCGCAGGCCATCCTGCTGTGCG AGGCCGACGGCACGCCGCAGGAGGTGGCCCACGAGGTCGCCATGATGGAGGCGGTATTCAAGCGGGCCGGCGCGACGCGC CTGCAGGTATCGGGCTCGGAAGCCGAGCGCCTGCGCTTCTGGGCCGGCCGCAAGAATGCCTTTCCCGCCGCCGGCCGCGT GTCGCCCGACTACTATTGCATGGACGGCACGATTCCCCGGCGCCACCTGGCGCGCGTGCTTGGCGCCATCGAGCAGATGG AAGACGATTTCGGCCTGCGCTGCGCCAACGTGTTCCATGCCGGCGATGGCAATCTGCATCCCCTGATACTGTTTGATTCG AACAAGCCCGATGAGGTCGAGCGCGCCGAGAAGTTCGGCGCCGCCATTCTCGAGCTGTGCGTGCAGGTTGGAGGCACCGT GACCGGAGAGCACGGTGTGGGTATGGAGAAAATAAATCAAATGTGCGTGCAATTCTCGCGTGACGAACTCGATGCCTTCC TGGCGGTCAAGCGGGCGTTCGACCCGCCCGGCCTGCTCAACCCTGAAAAGGTCATACCCACGCTGGCACGCTGCGCCGAA TACGGCAAGATGCACGTGCATGCCGGCGAAATGAGATTTCCCGATCTGGCGCGCTTCTAG Protein sequence : MNTLVDAGFSPRREGFAPQPLIEALLSILPAHCVLHREEDTRPYECDGLSLYRALPAVVALPEDEAQVRAIMQLCKRMNV PIVARGAGTGLSGGAMPHAQGVLLGLSKLNRIKRIDPAGGTAVVEPGVRNLAISEAAAPYGLYYAPDPSSQIACSIGGNV AENSGGVHCLKYGLTVHNVLRVRVVTIDGEIVELGSEAPDAPGLDLLSVFVGSEGMLGVVTEITVKLIPSPACAQVVMAS FASVEAAGNAVTQIIAAGLIPAGLEMMDRQAVHMVEPFVQAGYDLQAQAILLCEADGTPQEVAHEVAMMEAVFKRAGATR LQVSGSEAERLRFWAGRKNAFPAAGRVSPDYYCMDGTIPRRHLARVLGAIEQMEDDFGLRCANVFHAGDGNLHPLILFDS NKPDEVERAEKFGAAILELCVQVGGTVTGEHGVGMEKINQMCVQFSRDELDAFLAVKRAFDPPGLLNPEKVIPTLARCAE YGKMHVHAGEMRFPDLARF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 1e-142 | 60 |
