|
Name : clpB (BB3293) Accession : NP_889828.1 Strain : Bordetella bronchiseptica RB50 Genome accession: NC_002927 Putative virulence/resistance : Virulence Product : ATP-dependent protease, ATPase subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3524136 - 3526733 bp Length : 2598 bp Strand : - Note : ortholog of Bordetella pertussis (BX470248) BP1198 DNA sequence : ATGCGATTCGACAAACTTACCACCAAGTTCCAGCAGGCCCTGGCGGACGCGCAAAGCCTGGCCGCCCGTAACGATCATCC CTATATCGAGCCCGTCCATGTGCTGGCGGCCCTGTTGGGCGACCCCGACAGCGGCGCGGCCAGCCTGCTGGCGCGCGCCG GCGTCGCCGTCAACCGCGTGCAGCCGGCCATCGACAGCGCCCTGAAGGGCCTGCCGCAGGTGCAGGGCGAGGACAACGTC CAGGTCGGGCGCGAGCTGCAAAGCGTGCTCGTGCGCACCGACAAGGAGGCCGCGCGGCGCGGCGACACCTACATCGCCAG CGAGCTGTTCCTGCTGGCGCTGGCCGACGACAAGGGCGACGCCGGCCGCATCCTGCGCGAGGCGGGCCTGCAGAAGAAGG CCCTGGAAGCGGCCATCGACGCCGTGCGCGGCGGCGAGAACGTCTCGGGCGCGGAAGGCGAGTCCAACCGCGAGGCGCTG TCCAAGTACACGCTGGACCTCACCGAGCGCGCCCGCCAGGGCAAGCTGGATCCGGTCATCGGCCGCGACGACGAAATCCG CCGCACCATACAGATCCTGCAGCGCCGCACCAAGAACAACCCCGTGCTGATCGGCGAACCCGGCGTCGGCAAGACCGCCA TCGTCGAAGGGCTGGCGCAACGCATCGTCAACGACGAGGTGCCCGAGACGCTGCGCGGCAAGCGCGTGCTCTCGCTGGAC CTGGCGGCGCTGCTTGCCGGCGCCAAGTTCCGTGGCGAGTTCGAGGAACGCCTGAAGGCCGTGCTCAAGGAGCTGGCCCA GGACGACGGCCAGAACATCGTCTTCATCGACGAACTGCACACCATGGTCGGGGCGGGCAAGGCCGAAGGGGCCATGGACG CCGGCAACATGCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCATTGCATCGGCGCCACCACGCTGGACGAATACCGCAAG TACATCGAAAAGGATGCCGCGCTCGAGCGCCGCTTCCAGAAGGTGCTGGTCGGCGAGCCCGACGTGGAATCCACCATCGC CATCCTGCGCGGGCTGCAGGAGCGCTACGAGCTGCACCACGGCGTCGAGATCACCGATCCGGCCATCGTGGCGGCGGCCG AGCTGTCGCACCGCTACATTACCGACCGGTTCCTGCCCGACAAGGCAATCGACCTGATCGACGAGGCCGGCGCGCGCATC CGCATGGAAATCGACTCCAAGCCCGAAGTGATGGACCGCCTGGACCGGCGCATCATCCAGCTCAAGATCGAACGCGAAGC CGTCAAGAAGGAAACCGACGACGCCTCCATGCGCCGCCTGGCCGTGATCGAGGAAGAGCTGGAGAAGCTGCAGCGCGAAT ACAACGACTACGAGGAAATCTGGAAAGCCGAGAAGGCCGCCGTGCAGGGCACGCAGGCCATCAAGGAAGAGATCGACCGC GTGCGCGCCGAGATGGCCGAACTGCAGCGCAAGGGCCAGTTCGACAAGCTGGCCGAGCTGCAATACGGCAAGCTGCCCGA GCTCGAGGCGCGCCTGAAGGCCGCCGACAGCGCCGAGCGCGAGGCCGGCGAATCCGACAGCGGCAAGCCGCGCCTGTTGC GCACCCAGGTGGGCGCCGAGGAAATCGCCGAGGTCGTCTCGCGCGCCACCGGCATCCCGGTGGCCAAGATGATGCAGGGC GAACGCGACAAGCTGCTGCGCATGGAAGATTTCCTGCACAAGCGCGTCGTGGGCCAGGACGAAGCCGTGCGGCTGGTTTC CGATGCCATCCGGCGTTCGCGCGCGGGCCTGGCGGATCCGTCGCGTCCGTATGGTTCGTTCCTGTTCCTCGGGCCCACCG GCGTGGGCAAGACGGAGCTGACCCGTGCCCTGGCGGATTTCCTGTTCGACTCCGAAGAGCACATGATCCGCATCGACATG AGCGAGTTCATGGAGAAGCATTCCGTGGCGCGCCTGATCGGCGCGCCGCCGGGATACGTGGGCTACGAAGAAGGGGGCTA CCTGACCGAGGCGGTGCGCCGCAAGCCGTACAGCGTGATCCTGCTCGACGAGGTCGAAAAGGCGCATCCCGACGTGTTCA ACGTGCTGCTGCAGGTGCTCGACGACGGCCGCCTGACCGACGGCCAGGGGCGCACGGTGGACTTCCGCAATACGGTCATC GTCATGACGTCCAACCTTGGGTCGCAGCATATACAAAGCATGGCGGGCAAGCCGTACGAGGTCATCAAGGAAGTCGTGTG GGACGAGCTCAAGCATACGTTCCGCCCCGAGTTCCTGAACCGTATCGATGAAGTCGTGGTCTTCCATGGCCTGGAAGCCC AGCACATCGAGTCCATCGCCCGGATCCAGCTCAAGCGGCTGGGCGAGCGTCTCGAGAAGCAGGAGATGCGCCTGGACGTG TCCGATGCGGCGCTGGCGGAAATCGCACGCTCGGGCTTCGACCCGGTGTTCGGCGCCCGGCCGCTCAAGCGGGCCATCCA GCAGCAGATCGAGAACCCGGTCGCCAAGCTGATTCTCGAAGGCGTGTTCGGACCGCGCGATGTGGTGCCGGTCGACTGGC AGGACGGCAAGTTCGTCTTCACGCGCACTTTGCAATAA Protein sequence : MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAGVAVNRVQPAIDSALKGLPQVQGEDNV QVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREAL SKYTLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNDEVPETLRGKRVLSLD LAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK YIEKDAALERRFQKVLVGEPDVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGARI RMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDR VRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQG ERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDM SEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI VMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDV SDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 9e-93 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 1e-90 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-90 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_889828.1 | ATP-dependent protease, ATPase subunit | VFG2076 | Protein | 3e-97 | 44 |
