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Name : glcD (BPP2491) Accession : NP_884722.1 Strain : Bordetella parapertussis 12822 Genome accession: NC_002928 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 2683065 - 2684564 bp Length : 1500 bp Strand : + Note : ortholog of Bordetella pertussis (BX470248) BP2905 DNA sequence : ATGAACACCTTGGTGGATGCCGGTTTTTCGCCCAGGCGGGAAGGCTTTGCGCCCCAGCCGCTGATCGAGGCCTTGCTGTC GATACTGCCCGCGCATTGCGTGCTGCATCGCGAAGAGGACACACGCCCGTACGAGTGCGACGGCCTGTCGCTGTACCGGG CGCTGCCGGCGGTGGTGGCCCTGCCGGAAGACGAGGCGCAGGTGCGCGCCATCATGCAGCTGTGCAAACGCATGAACGTG CCGATCGTGGCGCGCGGCGCGGGGACCGGTCTGTCGGGCGGGGCCATGCCGCACGCGCAGGGCGTGCTGCTGGGGCTGTC CAAGCTCAACCGTATCAAGCGCATAGACCCCGCCGGCGGCACGGCCGTGGTCGAGCCGGGCGTGCGCAACCTGGCCATTT CCGAAGCCGCCGCGCCTTACGGGCTTTACTACGCCCCGGACCCATCCAGCCAGATCGCCTGTTCGATCGGCGGCAACGTG GCCGAGAACTCCGGCGGCGTACATTGCCTCAAGTACGGGCTGACGGTACACAACGTGCTGCGCGTGCGTGTGGTGACCAT CGACGGGGAGATCGTCGAGCTCGGCTCGGAAGCGCCCGATGCGCCCGGCCTGGACCTGCTGTCGGTGTTCGTCGGCTCCG AAGGCATGCTGGGCGTGGTGACCGAAATCACGGTCAAGCTGATTCCCTCGCCGGCCTGCGCGCAAGTGGTCATGGCCAGC TTCGCCAGCGTCGAAGCGGTGGGCAACGCGGTCACGCAGATCATTGCCGCAGGCCTGATCCCGGCCGGGCTGGAGATGAT GGACCGCCAGGCGGTCCACATGGTCGAGCCCTTCGTGCAGGCGGGCTACGACCTCCAGGCGCAGGCCATCCTGCTGTGCG AGGCCGACGGCACGCCGCAGGAGGTGGCCCACGAGGTCGCCATGATGGAGGCGGTATTCAAGCGGGCCGGCGCGACGCGC CTGCAGGTATCGGGCTCGGAAGCCGAGCGCCTGCGCTTCTGGGCCGGCCGCAAGAATGCCTTTCCCGCCGCCGGCCGCGT GTCGCCCGACTACTATTGCATGGACGGCACGATTCCCCGGCGCCACCTGGCGCGCGTGCTTGGCGCCATCGAGCAGATGG AAGACGATTTCGGCCTGCGCTGCGCCAACGTGTTCCATGCCGGCGATGGCAATCTGCATCCCCTGATACTGTTTGATTCG AACAAGCCCGATGAGGTCGAGTGCGCCGAGAAGTTCGGCGCCGCCATTCTCGAGCTGTGCGTGCAGGTTGGAGGCACCGT GACCGGAGAGCACGGTGTGGGTATGGAGAAAATAAATCAAATGTGCGTGCAATTCTCGCGTGACGAACTCGATGCCTTCC TGGCGGTCAAGCGGGCGTTCGACCCGCCCGGCCTGCTCAACCCTGAAAAGGTCATACCCACGCTGGCACGCTGCGCCGAA TACGGCAAGATGCACGTGCATGCCGGCGAAATGAGATTTCCCGATCTGGCGCGCTTCTAG Protein sequence : MNTLVDAGFSPRREGFAPQPLIEALLSILPAHCVLHREEDTRPYECDGLSLYRALPAVVALPEDEAQVRAIMQLCKRMNV PIVARGAGTGLSGGAMPHAQGVLLGLSKLNRIKRIDPAGGTAVVEPGVRNLAISEAAAPYGLYYAPDPSSQIACSIGGNV AENSGGVHCLKYGLTVHNVLRVRVVTIDGEIVELGSEAPDAPGLDLLSVFVGSEGMLGVVTEITVKLIPSPACAQVVMAS FASVEAVGNAVTQIIAAGLIPAGLEMMDRQAVHMVEPFVQAGYDLQAQAILLCEADGTPQEVAHEVAMMEAVFKRAGATR LQVSGSEAERLRFWAGRKNAFPAAGRVSPDYYCMDGTIPRRHLARVLGAIEQMEDDFGLRCANVFHAGDGNLHPLILFDS NKPDEVECAEKFGAAILELCVQVGGTVTGEHGVGMEKINQMCVQFSRDELDAFLAVKRAFDPPGLLNPEKVIPTLARCAE YGKMHVHAGEMRFPDLARF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 3e-141 | 60 |
