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Name : ccmF (BPP2695) Accession : NP_884910.1 Strain : Bordetella parapertussis 12822 Genome accession: NC_002928 Putative virulence/resistance : Unknown Product : cytochrome C-type biogenesis protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 2891933 - 2893927 bp Length : 1995 bp Strand : - Note : Similar to Pseudomonas fluorescens cytochrome C-type biogenesis protein CycK SWALL:CCMF_PSEFL (SWALL:P52225) (660 aa) fasta scores: E(): 4.8e-131, 54.42% id in 656 aa, and to Escherichia coli cytochrome C-type biogenesis protein CcmF or B2196 SWALL:CCMF_E DNA sequence : ATGATCCCGGAAATCGGCCTGTTCAGCCTCATCCTGGCGTTGCTGGTTGCCATCGTGCAGGGCGTGCTGCCGCTGGTGGG CGCATCGACCGGCTGGCAGGCCGGCCTGCGGGTGGCGCGGCCGGCCGCCGTCACCCAATTCTGCCTGGTCACCGTGGCCA TGGGCTGCCTGGCGTGGTCGTTCCTGGACAACGATTTCTCGGTGCTGTATGTGGCGGGCAACTCGCACGCCGACCTGCCC GCCGCCTACCGCTTCGCGGCGCTATGGGGCGGCCACGAGGGATCGCTGCTGCTGTGGCTGTACCTGCTGACCGCCTGGAC GCTGGCGGTGGCGCTGCACAGCCGCGCGCTGCCGCCGGCCTTCGCGGCGCGCGTGCTGGCCGTCATGGCCTGGATCAGCA TCGGCTTCCTGCTGTTCCTGCTGTTCCTGTCCAATCCGTTCGAGCGCCTGATGCCGCCGGCGCAGGCCGGACGCGACTTG AACCCCTTGCTGCAGGATCCGGGCATGATCGTGCATCCGCCCATGCTGTACATGGGCTATGTGGGCTTTTCGGTGGCGTT CGCCTTCGCCATCGCCGCGCTGCTGTCGGGCGAGCTGGACGCCATCTGGGCGCGCTGGGTGCGGCCCTGGACCTTGCTGG CCTGGATGTTCCTGACCATCGGCATCCTGCTGGGCAGCGCCTGGGCCTACTACGTCCTGGGCTGGGGCGGCTGGTGGTTC TGGGATCCGGTCGAGAACGCCTCGTTCATGCCGTGGCTGGCCGGCACGGCGCTGATCCATTCCCTGATCGTCACGGAGCG GCGCGGCGCCTTCCGCAGCTGGACGGTGCTGCTGGCCATCGCGGCGTTCTCGCTGAGCATACTGGGTACTTTCCTGGTGC GCTCCGGCGTGCTGACCTCGGTGCACGCCTTCGCGGTCGATCCCGGCCGCGGGCTGTACATCCTGGGCTTCATGACGCTG ATCGTGGGCGGCTCGCTGGCCCTGTACGCCTGGCGCGCGCCCACCGTAGGCCTTGGCGGGGGCTTCGCCCTGCTGTCGCG CGAATCGCTGCTGCTCAGCAACAACGTGGTGCTGGCCGCGGCTACCGGCGCGGTGCTGCTGGGCACGCTGTACCCGGTGG CGCTGGACGTGCTGGACTGGGGCAAGATCTCGATCGGCCCGCCCTACTTCGAGGCGGTGTTCGTGCCGCTGATGACGCCG GCGATCTTCCTGATGGGCGTGGGACCGATGGCGCGCTGGAAGCACAGCGCCGTGCCGGACCTGGCGCAGCGCCTGCGCAT TGCCTTCGGCGTGAGCCTGGCCACCGCGCTGACGGTGCCGCTGGCCTGGCCCGGCGCGCGCGCCTGGCCAGGCTCGCCGC TGATCGTATTGGGCCTGTGGCTGGCGGCCTGGTCGGTCGCCAGCGCCGCCGCGCATGCCTGGCAGCGCCTGGCCGACGGC GAAGGCTCGTGGGCGCGGCGCCTGCGCCGCCAGCCGCGCGCCTGGTACGGCATGCTGCTGGCGCACGCCGGCGTGGGCGT GTTCATCGCCGGCGTGACGCTGGCCAATGGCTATGAGGACAAGCAGGAATTGCGCATGGACATCGGCGCCACGCAGGCCG CCGGCGGCTACCAGTTCACCTTCGCCGGTATCGCGCCGGCCGCCGGCCCCAACTACCAGGCCGAACGCGCCCGCTTCGTG GTCACGCGCGACGGCCGGCCGGTGGTCACGCTGCATCCCGAGAAACGCCACTACACGGTGCAGGGCATGCCGCTCAGCCA TGCCGCCATCGACACCCGCTTTACCCGTGACCTGTTCGTGGCGCTGGGCGAGCCGGTCGGCCAGCGGGCCTGGACGGTGC GGCTGCAGGTCAAGCCCTTCATGGCCTGGATCTGGTCGGGTTGCGTGCTGATGGCGCTGGGCGGCCTGATGGCGGCAACC GACCGGCGCTACCGCCAGTGGCGCGCCGCCGAAGCGCGCCAAGCGGTGACGGCGGTGGCGCGGGAGGCCGGCTGA Protein sequence : MIPEIGLFSLILALLVAIVQGVLPLVGASTGWQAGLRVARPAAVTQFCLVTVAMGCLAWSFLDNDFSVLYVAGNSHADLP AAYRFAALWGGHEGSLLLWLYLLTAWTLAVALHSRALPPAFAARVLAVMAWISIGFLLFLLFLSNPFERLMPPAQAGRDL NPLLQDPGMIVHPPMLYMGYVGFSVAFAFAIAALLSGELDAIWARWVRPWTLLAWMFLTIGILLGSAWAYYVLGWGGWWF WDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVLLAIAAFSLSILGTFLVRSGVLTSVHAFAVDPGRGLYILGFMTL IVGGSLALYAWRAPTVGLGGGFALLSRESLLLSNNVVLAAATGAVLLGTLYPVALDVLDWGKISIGPPYFEAVFVPLMTP AIFLMGVGPMARWKHSAVPDLAQRLRIAFGVSLATALTVPLAWPGARAWPGSPLIVLGLWLAAWSVASAAAHAWQRLADG EGSWARRLRRQPRAWYGMLLAHAGVGVFIAGVTLANGYEDKQELRMDIGATQAAGGYQFTFAGIAPAAGPNYQAERARFV VTRDGRPVVTLHPEKRHYTVQGMPLSHAAIDTRFTRDLFVALGEPVGQRAWTVRLQVKPFMAWIWSGCVLMALGGLMAAT DRRYRQWRAAEARQAVTAVAREAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 2e-134 | 56 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 3e-96 | 52 |
