Gene Information

Name : fecI (BP1136)
Accession : NP_879913.1
Strain : Bordetella pertussis Tohama I
Genome accession: NC_002929
Putative virulence/resistance : Virulence
Product : ECF family RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 1198526 - 1199059 bp
Length : 534 bp
Strand : +
Note : Similar to Escherichia coli probable RNA polymerase sigma factor FecI or B4293 SW:FECI_ECOLI (P23484) (173 aa) fasta scores: E(): 1e-21, 43.82% id in 162 aa, and to Pseudomonas aeruginosa RNA polymerase sigma factor Pa3899 TR:Q9HXB4 (EMBL:AE004807) (169 a

DNA sequence : 
GTGCCTGCCAGCCTGATCACTTCGCCCTCCGCCCGTCCCGCCGCCGACACCGCCGCGGTGGAGGGCCTGTACCGCCAGCA
CCGGTCGTGGCTGGCCGGGTGGCTGCGGCGGCGGCTGGGCTGTCCGCACCGCGCCGAGGATCTGACGCAGGATGTGTTCG
TGCGCGTGATCCAGGGGCGCAAGGCGGTACGCATGGAGCAGGCGCGCGCCTTGCTGGCCACCATCGCCAAGGGACTGGTC
ATCGATCACCAGCGCCGTGCGGCGCTGGAGCACGCTTATCTGGAATACCTGGCGGCGCAGCCGTCGGGGCACGCGCCTTC
GCCGCAACAGCAGGCCGAGCTGCTGCAGGCGCTGGTCGAGCTCGATCGCCTGCTCGAAGGCTTGCCGCCGCACGCCCGCG
CGGTGTTCCTGATGTCGCAGCTCGAAGGGCTGGGCTATGCCGAGATCGCGCAACGCCTGCGCATTTCGCTCAGTTCGGTG
CAGCAATACATGCTGCGCGCCATGAGCGCTTGTTACATGGCATTCCATGAGTAG

Protein sequence : 
MPASLITSPSARPAADTAAVEGLYRQHRSWLAGWLRRRLGCPHRAEDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLV
IDHQRRAALEHAYLEYLAAQPSGHAPSPQQQAELLQALVELDRLLEGLPPHARAVFLMSQLEGLGYAEIAQRLRISLSSV
QQYMLRAMSACYMAFHE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-23 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fecI NP_879913.1 ECF family RNA polymerase sigma factor VFG1049 Protein 4e-24 43