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Name : rpoB (GSU2863) Accession : NP_953905.1 Strain : Geobacter sulfurreducens PCA Genome accession: NC_002939 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 3138153 - 3142265 bp Length : 4113 bp Strand : - Note : - DNA sequence : ATGGCTTATTCAATTGCGAATAACCAGCTTCTGCGCAAGAATTTCGCCAAGATCAAGAAGATCATCGACATCCCCAATCT GATTGACATCCAGAAGAATTCCTACAAACGATTCCTCCAGATCGACACTCCCCCCGAGGCCCGCAAGAACAGTGGGCTTG AGGCGGTTTTTAAAAGCGTCTTTCCCATAAAGGATTTCAGCGATACTGCCTCGCTTGAGTACGTTACCTATACTCTTGGC GCTCCCAAGTATGATGTTGAGGAGTGCCACCAGCGCGGGATGACCTTCGCCGCTCCCATGAAGGTGAAGGTTCGGCTCGT GGTCTGGGACGTGAATAAGGATACCGGCGTCCGTTCCATCCGCGATATCAAGGAGCAGGAGGTCTACTTCGGCGAGATCC CGCTCATGACCGAGAACGGTACGTTCATCATAAATGGTACGGAGAGGGTTATCGTCAGCCAGCTCCACCGCTCACCGGGC GTTTTCTACGACCATGACAAAGGCAAGACCCACTCCAGTGGCAAGGTGCTTTATTCGGCACGGGTAATTCCCTACCGCGG CTCCTGGCTCGATTTCGAGTTCGACCACAAAGATATCCTCTTCGTGCGGATCGACCGCCGCCGCAAGATGCCGGCGACCG TGCTGCTCAAGGCACTTGGCTATTCCGCCGAAGCTCTGCTGAACTACTTTTATAAGAGCGAAGAGATCCTCGTCGCCGCC GAGGGCATGTGGAAGAAAGCCGATCCGGAGCTGCTCGCGAGCCAGAAGGCATCTGTCGACATCGTTGCGCCTAAGACGGG CGAAGTGCTGCTCAAGGCCAACCGCAAGTTCACCAAGGCAGCAATCCGCAAGATGACTGAGCACGGCATCACGCAGATTC CGATTACCATGGAGGAAGTGCTCGGCAAGTATGCCTCCAACGATATCGTTGACCCGTCCACCGGGGAAGTCATCGTAGAG TGCAACGACGAGATCACCCAGGCGCGCCTCGATGACATCAAGGCTAAGGGGATCACTGAGTTCAAGGTGCTCTTCATCGA CAACCTCCATGTGACTTCATCGCTTCGCGATACGCTCATCGCCGACAAGATTGCGGCAACGGAAGAGGCTCTCATCGAGA TTTACCGCCGCCTGCGCCCCGGCGATCCGCCGACCCTCAAGAGCGCACAGGCCCTCTTCGAGAACCTGTTTTTCAATGCC GAGCGGTATGACCTTTCTGCCGTTGGTCGTCTCAAGCTGAATTTCAAGCTTGGGCTGAACGTTCCCCTCGACTGCCAGAC GCTGACGAAAGACGACGTGCTCGAGGTGGTGCGCTACCTGATCGACCTCAAGAACGGCAAGGGCACCATCGATGACATCG ATCACCTGGGTAACCGCCGCGTGCGCGCCGTGGGCGAGCTGCTGGAGAACCAGTACCGGATCGGCCTCGTCCGTATGGAG CGGGCCATTAAAGAGCGGATGAGTCTCCAGGAGGTCGAGAACCTCATGCCGCACGACCTGATCAACTCCAAGCCCGTCTC AGCGGTCGTCAAGGAGTTCTTCGGTTCGTCCCAGCTCTCGCAGTTCATGGACCAGACGAACCCCCTCTCCGAGGTTACCC ACAAGCGACGGCTCTCGGCCCTCGGACCGGGCGGTCTGACTCGCGAACGTGCTGGCTTCGAGGTCCGCGACGTACACCCG ACCCACTACGGCCGGGTCTGCCCCATCGAGACTCCTGAAGGTCCGAACATCGGTCTCATCGCGTCCCTCTCCACTTACGC GCGCATCAATGAGCACGGCTTTGTGGAGACCCCTTACCGCATCGTCCAGGACGGCAAGGTAACAAGCGACGTCAAGTTTT TCTCGGCTCTGGAGGAAGAGGGGCATGCAATCGCCCAGGCCAACGCCGAGATGGACGCAGACGGCCGCTTCGTTAACGAA TACGTATCGGCCCGCAAGTCGGGCGAGTTTCTGCTGGTCCACCGGGACGAACTCGAACTCATGGACGTTGCTCCCATGCA GCTCGTCTCCGTGGCCGCATCGCTCATCCCGTTCCTGGAGAATGATGACGCCAACCGCGCACTCATGGGGTCGAACATGC AGCGCCAGGCCGTGCCGCTCCTCAAGGCCGATTCGCCCCTCGTGGGCACTGGTATGGAGCGCGTCGTTGCCAAGGATTCC GGGGTGTCAGTGGTGGCGCGCCATACCGGCATCGTCGAGTCGGTCGATGCCTCTCGCATCGTTGTCAAGATCGACGAGGA CGAGTTCGATGAAACCGGCACCGGTGTCGACATCTACAATCTGATCAAGTTCGCCCGTTCAAACCAGAACACCTGCATCA ACCAGCGGCCGGTGGTCAAGGTGGGCGACCATGTCAAGCGGGGCGACGTCATTGCCGACGGTCCCTCCACCGACATGGGC GAACTCGCCCTTGGGCAGAATGTGGTTGTTGCCTTCATGCCGTGGGGCGGGTACAACTTCGAGGACTCCATCCTCGTGTC CGAAAAGCTCGTGAAGGACGACCGCTACACCTCGATCCACATTGAGGAGTTCGAGTGCGTTGCTCGCGACACCAAACTCG GCAAGGAGGAAATCACCTCCGATATCCCGAACCTCGGCGAAGAGGCCCTAAAGGACCTGGACGAGTCGGGGATCATCCGG ATCGGTGCGGAGGTGAAGCCGGGAGACATCCTCGTGGGCAAGATAACCCCCAAGGGCGAAACCCAGCTTTCGCCGGAGGA AAAGCTCCTCCGTGCCATCTTCGGCGAGAAGGCGGGAGATGTCCGCGATACCTCCCTGCGCGTCCCGCCGGGGGTCGAGG GAACCGTCATCGGGGCCAAAATCTTCTCGCGCAAGGGGGCTGATAAGGACTCCCGTACCGAGATGATCGAGCGGATGGAA GAGGACAAACTGCGCAAGGATGAGCAGGACGAGATCCGCATCATCCGCAATTCCGCCGTGGGCAAGCTCAAGAAGCTCCT CGTCGGCAAGTCCGCTGCGGTCAAGGTGGAGGACAAGAGCGGCCGGACCGTCATCGCCAAGGGTGCCGCCATTACCGAAG AGGCCCTTGACGCGATCCCGCTCGATCGTTGGGACGAGATTTCCGTGTCCGGCGAGGCGGGGGTCGATGAGAAAGTGTCG GCGATTCTCCAGACACTCCAGCAGCAGATCGATATAATCCGTTACGTGTTCGATGACAAGGTCCAGAAGCTGAAGCGTGG CGACGACCTGCCGCCGGGCGTCATCAAGATGGTGAAGGTCTACATCGCCATCAAGAGAAAGCTCCAGGTGGGGGACAAGA TGGCCGGGCGCCACGGTAACAAGGGTGTCGTCTCCCGTATCCTCCCCGAAGAAGACATGCCATACATGGAGGACGGTCGT CCGGTCGAGATCGTTCTGAACCCCCTCGGTGTTCCGTCCCGTATGAACGTGGGCCAGATTCTCGAAACCCACTTGGGATG GGCAGCCAAGGGCATCGGCTGGAAGATCGAAGAGATGCTTGAAAGCTACTCGCCGGCCGACCACATCAAGGGCTACCTCA AGGATGTGTATGGCACCACAGAGATGGACACATTCCTTGACTCTCTCGACAAAGACGAGCTCATGAACGTTGCAAAGCGG CTCCAGCGGGGCGTTGCTATGGCATCCCCCGTCTTCGAGGGGGCCTCGGAGGAGCAGATCCGGAGCATGCTCGATAAAGC CGGATTTGATGAAACCGCGCAGGTTTCCCTCTATGACGGCAAGAGCGGTGAGCCCTTCAAGCATAAGGTCACCGTCGGGG TCATGTATGTCCTCAAACTTCATCACTTGGTCGACGATAAGATCCATGCCCGCTCCATTGGACCCTACAGCCTTGTGACC CAGCAGCCGCTCGGCGGCAAGGCTCAGTTCGGCGGCCAGCGCCTCGGGGAGATGGAAGTCTGGGCCATGGAAGCCTACGG TGCCGCCTATGCGCTTCAGGAATTCCTGACCGTCAAGTCCGACGACGTGGCGGGCCGGACGCGGATGTACGAGGCCATCG TCAAAGGCAAGCACACCCTTGAGCCGGGGCTTCCAGAATCCTTCAACGTTCTTATCAAGGAACTCCAGTCCCTCTGCCTC GATGTGGAACTGCTCGAAGGGGATGAAGACTAG Protein sequence : MAYSIANNQLLRKNFAKIKKIIDIPNLIDIQKNSYKRFLQIDTPPEARKNSGLEAVFKSVFPIKDFSDTASLEYVTYTLG APKYDVEECHQRGMTFAAPMKVKVRLVVWDVNKDTGVRSIRDIKEQEVYFGEIPLMTENGTFIINGTERVIVSQLHRSPG VFYDHDKGKTHSSGKVLYSARVIPYRGSWLDFEFDHKDILFVRIDRRRKMPATVLLKALGYSAEALLNYFYKSEEILVAA EGMWKKADPELLASQKASVDIVAPKTGEVLLKANRKFTKAAIRKMTEHGITQIPITMEEVLGKYASNDIVDPSTGEVIVE CNDEITQARLDDIKAKGITEFKVLFIDNLHVTSSLRDTLIADKIAATEEALIEIYRRLRPGDPPTLKSAQALFENLFFNA ERYDLSAVGRLKLNFKLGLNVPLDCQTLTKDDVLEVVRYLIDLKNGKGTIDDIDHLGNRRVRAVGELLENQYRIGLVRME RAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHP THYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPYRIVQDGKVTSDVKFFSALEEEGHAIAQANAEMDADGRFVNE YVSARKSGEFLLVHRDELELMDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLKADSPLVGTGMERVVAKDS GVSVVARHTGIVESVDASRIVVKIDEDEFDETGTGVDIYNLIKFARSNQNTCINQRPVVKVGDHVKRGDVIADGPSTDMG ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARDTKLGKEEITSDIPNLGEEALKDLDESGIIR IGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDSRTEMIERME EDKLRKDEQDEIRIIRNSAVGKLKKLLVGKSAAVKVEDKSGRTVIAKGAAITEEALDAIPLDRWDEISVSGEAGVDEKVS AILQTLQQQIDIIRYVFDDKVQKLKRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGR PVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWKIEEMLESYSPADHIKGYLKDVYGTTEMDTFLDSLDKDELMNVAKR LQRGVAMASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVT QQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVAGRTRMYEAIVKGKHTLEPGLPESFNVLIKELQSLCL DVELLEGDED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 58 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 58 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 0.0 | 50 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 49 |
| rpoB | NP_953905.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 48 |
