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Name : secD (HD1752) Accession : NP_874118.1 Strain : Haemophilus ducreyi 35000HP Genome accession: NC_002940 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1462952 - 1464796 bp Length : 1845 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAACCGTTTCCCATTATGGAAGAATCTGATGATCATCTTTGTGATTATCATCGGTGGCTTATATGCTCTTCCAAA CTTATATGGTGAAGACCCTTCTGTACAAATTTCAGGTACACGTGGTCAAGAAGCCTCGAGCGAGACGCTCGCGCATGTGC AAGAAACGTTGTCATCGATGAATATTACACTAAAGTCAGCCGTTCTTGAGAACGGCTCTATTTTGGTCCGCTTAACTAAT GATGAACAACAACTACCTGCAAAAGAAAAAATTTCTGAAGTATTAGGTGATAAATTCTCCGTTGCATTAAACCTTGCTCC TGCTACGCCTGTGTGGCTAAGCAACATTGGCGGTAGCCCAATGAAACGGGGTTTAGATTTACGTGGTGGCGTTCGCTTCT TAATGGAAGTTGATATGAATACCGCATTAGTTAAGCAACAAGAAACCCTACAAGATAGTTTACGTACTGAATTACGCAAA GAAAAATTACAGTATAAAGCGATCAAAAAAGGGGATAATTTTACCACGCAGATTGAATTTGCTAACAATGATATTGCTGA AAAAGCGGCGCGTTTTATTAAACGTAATCACGCATATCTTGAAACCAAGTTTATTACCGCTTCTGAAGTTGCGTTTACCC CTTCAGAAACAGCTCTAGCTAAATCTCGTGATACCGCAATTGAACAAAACTTATCTATTTTACGCAAACGTGTTGAAGAA TTAGGGGTTTCTGAACCAACTATTCAACGTCAAGGTGCTGATCGAATTGTGGTTGAATTGCCTGGTGTACAAGATACTGC GCGTGCCAAAGAGTTATTAGGTGCAACGGCAACCCTTGAGTTTCGTTTAGTCAATGCTGAAGCAAATGTTGAATCTGCTA CACGAGGTATTGTGCCTGCTGATTCTGAACTAAAACATACACGTGATGGACGTGCCGTTGTATTGCGCCGTAAACCTTCA CTCGGTGGTGAACATATTGTCGATGCAACTTCTGGCAAAGATGAGCGTGGCTTACCACAAGTAAGTATTCATCTTTATGC AAAAGGCGGTAATATGATGGCAGATATTACCAAAAGTGCTGTTGGCAGACCGATGGCAACGCTGTATAGCGAGTTTAAAG ATTCTGGCCGTAAAGATGCAAATGGCAAAGTTATTTTAGAAAAGCATGAAGAAGTAATTAATGTAGCAACGATTAACTCA CGTCTTGGTAGTCAATTCCAAATTACGGGTATTGACTCTACGGCAGAAGCACAAAATCTAGCAGTATTGTTACGTTCTGG CGCCTTGATTGCTCCGATTGTTATTGTTGAAGAGCGAACCATAGGGGCTTCTTTGGGTGCTGATAATGTAGCAAAAGGAA TGGAAGCGGGTATATATGGCTTAATTTTAACCATTGTATTCTGTTTAATTTACTATAAAGTTTTTGGTATTTTTGCTACT GCAGCATTACTCGTAAATATGGTATTAACGATTGGCTTAATGTCATTAATTGGTGCAACCTTAACCATGCCAGGTATTGC CGGTATTATCCTCGCCGTAGGTATGTCAGTTGATGCCAACGTATTGATTTATGAGCGGATTAAAGAAGAGCTCCGCAATG GTCGTTCTATTCAACAAGCCATTAATGAAGGCTATAATGGCGCATTTACCTCAATTTTCGATTCTAACTTAACCACCATA CTGACTTCTTTAGTGCTGTATTCTGTTGGTACAGGCCCGGTAAAAGGCTTTGCAATTACTCTAGCATTAGGTGTGATGAT TTCAATGTTCACTGCAATTACTGGAACACGGATGTTAGTCAACTGGATATATGGCGGTAAACGTGTCAAAAAACTTTGGA TTTAA Protein sequence : MLNRFPLWKNLMIIFVIIIGGLYALPNLYGEDPSVQISGTRGQEASSETLAHVQETLSSMNITLKSAVLENGSILVRLTN DEQQLPAKEKISEVLGDKFSVALNLAPATPVWLSNIGGSPMKRGLDLRGGVRFLMEVDMNTALVKQQETLQDSLRTELRK EKLQYKAIKKGDNFTTQIEFANNDIAEKAARFIKRNHAYLETKFITASEVAFTPSETALAKSRDTAIEQNLSILRKRVEE LGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATATLEFRLVNAEANVESATRGIVPADSELKHTRDGRAVVLRRKPS LGGEHIVDATSGKDERGLPQVSIHLYAKGGNMMADITKSAVGRPMATLYSEFKDSGRKDANGKVILEKHEEVINVATINS RLGSQFQITGIDSTAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAKGMEAGIYGLILTIVFCLIYYKVFGIFAT AALLVNMVLTIGLMSLIGATLTMPGIAGIILAVGMSVDANVLIYERIKEELRNGRSIQQAINEGYNGAFTSIFDSNLTTI LTSLVLYSVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWIYGGKRVKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-124 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-124 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-124 | 45 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-124 | 45 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-124 | 45 |
