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Name : fimC (HD0283) Accession : NP_872873.1 Strain : Haemophilus ducreyi 35000HP Genome accession: NC_002940 Putative virulence/resistance : Virulence Product : fimbrial outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 216833 - 219334 bp Length : 2502 bp Strand : + Note : - DNA sequence : TTGTCTTTTGCAAAAAAAGATTACTTTGCTATTTTTTTATTGCTCTCAATGCTACCTTTATTAATGACAAGCAGTAATGC TTTAGCTATGCAAGATATTGAATTTAATACAGATACACTAGATCTAGAAGATAAAGAAAATATTAATTTAGGTTATTTTT CGCGGGCTAATTATTTGATGCCCGGATCCTATAGCTTAGAGATTAAGGTCAATAATAATAATTTGTCAGAGGAAGAAGTC GTATTTTTGGCACCAGAAGATGATCCCAAAGATAGTGTTGCATGTTTATCTCCAGAATTAACCGATAAACTAGGGCTTAC GGATAAATATCAAAAACAGTTGACGTGGTGGCATGATAATCAGTGTTTAAATTTTGATAGTCTTCCTGGCATACAAGCAA AACCGGACTTAGCGTCTTCCTCATTACATATCAGCATACCACAAGCTTATTTAGAATATAGTGCTATTGATTGGGATCCA CCTTCTCGTTGGGATAATGGCATTCCTGCGATTTTACTTGATTATAATATTAATGGAAATATTAGTCGTTTTGGTAAGGA GAAAAGGTATGCATTAAATGGTACGGGTGTTTTAGGGCTTAATTTAGGCGCTTGGCGACTTAGAGCTGATTGGTATGGTC ATTTAGATAATAATTCAAGTGTTTTTGAGCAAATGAATAATGAGCGTGTTATTCAATGGAATCGCTTCTATGCTTTTCGT GCATTAACTAACCTTAGCGCTAGATTAACCTTAGGTCAAGATTATCTTAATTCTAATCTATTTGACTCATTTCGTTTTCT TGGTGCCGGCTTAGAATCTGATTTAAATATGTTGCCTCCTAATTTACGAGGCTATGCTCCAGAAATAACGGGGATCGCAA AATCTAATGCAACGGTCAACATTAGCCAAAAAGGACATGTTATTCATACTGAAAAAGTGGCCGCTGGACCCTTTCGTATT CAAAATTTATATGATGGAGTTCGAGGAAAACTAGACGTTAAAGTCGAAGAAGAAGATGGTAGTGTCCAGCAATATCAAGT GGATACTGCAAATTTGCCTTATTTAACTAGGCCAGGCCAAATACAATATAAATTAGCATTAGGTCAACCCAATGTTGAGC GTGATTACCAGCGTCAGAATTTTGCTATGGGAGAGCTTTCATTTGGTGGAGGTAATGGCTGGTCATTGTTTGGCGGTGCA ATTGTGAGTAATAACTACCATGCTATTTCAGCCGGGATTGGACGTGATTTATTAGCTTTCGGGACATTATCATTTGATAT AACACAATCTTTTGCGCGTTTGGCAGAGGAAAATAAAAAACTTAGAGGTAGCTCATATCGAGTTAACTATGCGAAATACT TTGATTCCATAGACAGCCAAATTCAGTTTTCTAGTTATCGTTTTTCTGAACAAAACTTTATGAATCTATTAGACTTTTTA GAGGTTAATCATACAGGTATTCGTTATGGTAGTAGTAAAAACCAATATGTTGTTTCTATGAGTAAAAATTTTAACAATAT AGGAATGTCAATGGTTTTGAATTATAACTATGAAACATATTGGGATCAGGAAAGCACCAACTTTTATAGTTTAACTCTTT CTAAAGCATTTGATATTGGCAAATTAAAAAATGTCAATGTTAACTTATCCATAAATCGTAACATCTACAATAATGTTATT GATAATAGTATTTATTTATCCACATCATTTGCATTAAGCAATGGTGGGAATATGAGTTATTCGTTGAGTAATTCGCGTTA TGAAACGTCTAATCGGTTAACGTATAGTGATATTTTTGATGAAAGAACCAATTACCAATTGAGTGTAGATGCTAGCGGTA AATATAAAAGCGGTAGTGCATATTTGAATTACCAAGGGGACACTGCCCATTTTTCGACGAGTGCAAGTTTCTCAAATAAT CAAAGTTCATTCAGTATGGCAGCATCAGGAGGCGTAACACTAACAACTGAAGGTGTGGCAATGCATAGAATGGGAAGTCC GGGTGGTACACGGTTATTATTAGATACAGATGGTGTTGCTAATGTTCCTGTCAGAGGATTTGGTGCACCGGTTAAAACGA ATTTATTTGGTAAGGCTGTTGTAGGTGATGTGAGTAGTTATTATCGTAACAATGTTCAAATCGATTTAAACACATTATCT GATGATATTGATGTTCAGCAATCAGTTGTACAAGCTACCTTAACTGAAGGCGCAGTAGGTTATCGTAAGTTTTCGGTTGT TTCTGGACAAAAAGTGATGACAACATTGCAAACGGCTGAGGGTAATTCCATACCATTTGGCGCACAAGTTCTTAATAAGA AAGGGCTGAATACAGGAATTGTTGATGATAATGGTAATGCGTATATTACTGGCGTTGAACCAGGATCAATAATGACAGTG CAATGGAGTAATGAGGATAAATGCGAAATAAAATTTCCTAAAACCATTGATGTTAATATCCCTTCTTTATTGTTGCAATG TGCACCTATGGTGAAGCATTAA Protein sequence : MSFAKKDYFAIFLLLSMLPLLMTSSNALAMQDIEFNTDTLDLEDKENINLGYFSRANYLMPGSYSLEIKVNNNNLSEEEV VFLAPEDDPKDSVACLSPELTDKLGLTDKYQKQLTWWHDNQCLNFDSLPGIQAKPDLASSSLHISIPQAYLEYSAIDWDP PSRWDNGIPAILLDYNINGNISRFGKEKRYALNGTGVLGLNLGAWRLRADWYGHLDNNSSVFEQMNNERVIQWNRFYAFR ALTNLSARLTLGQDYLNSNLFDSFRFLGAGLESDLNMLPPNLRGYAPEITGIAKSNATVNISQKGHVIHTEKVAAGPFRI QNLYDGVRGKLDVKVEEEDGSVQQYQVDTANLPYLTRPGQIQYKLALGQPNVERDYQRQNFAMGELSFGGGNGWSLFGGA IVSNNYHAISAGIGRDLLAFGTLSFDITQSFARLAEENKKLRGSSYRVNYAKYFDSIDSQIQFSSYRFSEQNFMNLLDFL EVNHTGIRYGSSKNQYVVSMSKNFNNIGMSMVLNYNYETYWDQESTNFYSLTLSKAFDIGKLKNVNVNLSINRNIYNNVI DNSIYLSTSFALSNGGNMSYSLSNSRYETSNRLTYSDIFDERTNYQLSVDASGKYKSGSAYLNYQGDTAHFSTSASFSNN QSSFSMAASGGVTLTTEGVAMHRMGSPGGTRLLLDTDGVANVPVRGFGAPVKTNLFGKAVVGDVSSYYRNNVQIDLNTLS DDIDVQQSVVQATLTEGAVGYRKFSVVSGQKVMTTLQTAEGNSIPFGAQVLNKKGLNTGIVDDNGNAYITGVEPGSIMTV QWSNEDKCEIKFPKTIDVNIPSLLLQCAPMVKH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 8e-138 | 44 |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 7e-138 | 43 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 2e-136 | 43 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-136 | 43 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 4e-138 | 43 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 5e-138 | 43 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 5e-138 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimC | NP_872873.1 | fimbrial outer membrane usher protein | VFG1548 | Protein | 4e-138 | 43 |
| fimC | NP_872873.1 | fimbrial outer membrane usher protein | VFG0884 | Protein | 2e-138 | 43 |
| fimC | NP_872873.1 | fimbrial outer membrane usher protein | VFG0895 | Protein | 2e-138 | 43 |
