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Name : secD (lpg2001) Accession : YP_096017.1 Strain : Legionella pneumophila Philadelphia 1 Genome accession: NC_002942 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2240180 - 2242036 bp Length : 1857 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCAAAATAAATATCCTCTATGGAAAAATCTAATGCTGATAGTGATTGCAGTCATTGGATTTGTTTACGCTATACCGAA TTTGTATACGGAAAATCCCGTTGTTCAAATTTCTGCGGGTACAGATGAAGATACAGAGACAATAAAAAATCAGGTAGAGT CCATATTAAAAAATGCCAATATGGATTATAAATCTCTGGTTGTGGAGAGGGATGGGGTAGAGGTAGTATTTTCTTCTACT GATTCTCAATTATTAGCTCGTGATGTTATCAAGAATAGCCTGGGATCTGATTACACAGTGGCTTTGAATTTAGCGCCTTC CACACCAGCTTGGCTTGAAGCAATTCATGCTGATCCTATGAAACAAGGATTGGACTTAAGAGGCGGTGTTCATTTTCTTC TTGAAGTGGATGTCGAGAGTGTTATAAGTCGGCGTTATGAAGGAATAATGAAAAATATTGGCCAAGAATTACGTGAAGCA GGTATTCGTTATTCAGGCATACGTTATTTATCAGATAAAGGGATTGAATTGCGTTTCAGAGATTCTGACTCAATGGAAAA TGCTTTAGTTGAGTTAAGACAAAAAATATCTGATGTGGTTTTTGTTAAAACTAAAACACAAAATTCAATTTTAGGCGCCA TTTCTCCAGCAGAATTAAATTCCATAAGACAAAATACTATTGAGCAGACAATGAGTATCTTGAGAAATCGTGTCAACGAG CTCGGAGTTGGTGAAGCTGTCGTACAACAACAAGGGGCGACTCGAGTCGCCGTTGATTTGCCAGGCATTCAAGACGCGGC CAGAGCAAAACAAATACTTGGTGGTACTGCTACTTTGGAATTTCATTTGGTTGATCAGGAAAATGACCCTTTCATTGCAA AGCAAACTGGCGTAGTTCCTGTCAATGATAAGCTGTATATGATGGATGGTCATCCTATCTTATTAAAGAGACAGGTTGTT TTAAGTGGTGACTCTATTACGTCAGCAGTGTCCAGTTTTGATCAACAAACGGCTTCTCCATCTGTTCAAATTCAGTTGGG TGGTGGGGGCGAGAGCTTGTTTACTAAAGTTACGCGTGAAAATATCGGTAAGCGCATGGCGATCGTTTTTGTGGAAACCA AAACGACTACACAAACAATTAATGGCGAGGAAAAACGAGTAACAAAGAAAGAAGAGCGAGTTATTAGTGCGCCAGTGATT CAAAATGCTTTAGGTAGCAATTTCCAGATTACCGGACTGACCGATAGTAAAGAAGCAAGTAATCTGGCTTTATTATTAAG AGCTGGCGCTTTACCCGCTGCAATCTATCCTGTTGAAGAGCGTACCGTTGGCCCAACTCTTGGAAAGGAAAATATTCGCC GAGGACTTATTTCCCTGGAAGTTGGTATGGGTTTAATTTTGGTACTAATGCTCGTGTATTATCATTTTTTTGGTTTAATT GCTGATATTGCATTGATGCTGAATTTAGTTTTTCTTTGCGCATTGTTATCCATAATTGATGCGACTCTGACTTTACCGGG AATTGCGGGGATTGTTTTGACCGTGGGCATGGCTGTTGATGCCAATGTCCTGATTTATGAGCGGATTAGAGAGGAGTTGC GTAATGGATTGTCTCCTCAAGCTGCTATTCATGCAGGATATGAGCGAGCATTTTCAACTATATTGGATGCCAACGTGACT ACTTTAATTGTAGCTATCATTCTATTCGCGGTGGGCACAGGACCGGTGCGCGGGTTTGCGGTTGTCCTTTCTCTAGGTTT GTTAACTTCTATGTTAACTGGTATTACTTACACTAGGGCTATTGTGAATTGGTATTATGGTGGGCGTAATGTCAAAAAAT TATCTATAGGCATATAA Protein sequence : MQNKYPLWKNLMLIVIAVIGFVYAIPNLYTENPVVQISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSST DSQLLARDVIKNSLGSDYTVALNLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREA GIRYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDVVFVKTKTQNSILGAISPAELNSIRQNTIEQTMSILRNRVNE LGVGEAVVQQQGATRVAVDLPGIQDAARAKQILGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVV LSGDSITSAVSSFDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVI QNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHFFGLI ADIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVT TLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIGI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-109 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-110 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-110 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-110 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 4e-110 | 47 |
