Gene Information

Name : PP_0162 (PP_0162)
Accession : NP_742331.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 185615 - 186136 bp
Length : 522 bp
Strand : -
Note : -

DNA sequence : 
ATGCCGGCGCCCTCCTCCATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACCTG
GCTGCGTAGCAAGCTCGGCAACGCAGCCGATGCGGCTGACCTCGCCCAGGATACCTTCGTCCGCTTGCTACAGCGTCGTG
AACAATTGCAGCTGAATGCGCCCAGGGCCTTCCTGCGCACGGTAGCGCGTGGGCTGGTGATCGATCATTGGCGCCGCGAG
GAACTGCACAGGGCCTATCTGGAGGCTTTGGCCCATGTGCCGGAAGCACTGGTCCCCTCAGTCGAGACCCGCGAGCTGCT
GCTGGAATTGCTTGAGCGTATTGCACGCATGCTCGACGGCCTCAAACCCAAGGTACGTCGCGCATTCCTGCTGGCTCAAT
GCGAGGGGCTGAAGCATCAGGCCATCGCCGAACAGATGGGGATCTCCGTGCGCACCGTTGAGCGCTACATCGCCAATGCG
CTCTATCACTGCTACGTGCTGCGCTATGAAGACGACTGCTGA

Protein sequence : 
MPAPSSMPSNDSVQTLYSDHHGWLHTWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNAPRAFLRTVARGLVIDHWRRE
ELHRAYLEALAHVPEALVPSVETRELLLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIANA
LYHCYVLRYEDDC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-30 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PP_0162 NP_742331.1 ECF subfamily RNA polymerase sigma factor VFG1049 Protein 1e-30 44