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Name : PP_0352 (PP_0352) Accession : NP_742519.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 429002 - 429520 bp Length : 519 bp Strand : - Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : TTGTCTTCTGCACAAAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCACCGCGGCTGGCTGCTCGCCTGGCT GCAACGCAGCATGGCCTGCCGCCAGCGTGCTGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTTGGTCGTGAGCAAC TGGACACCCCCCGCGAACCCCGCGCGTTTCTGGCCGCCGTGGCCAAGGGGCTGATGTTCGACCACTTCCGCCGCGCCGCG CTGGAACAGGCCTACCTGGCCGAGCTGGCACTGATCCCTGAAGCCGAACAGCCCTCGCCAGAAATGCAGCACCTGATCCT TGAAGACCTCAAAGCCATCGACCGCCTGCTCGGCAAGCTGTCGAGCAAGGCTCGCGCGGCGTTTCTGCACAGCCGTCTGG ACGGCATGGGCCATGCCGAAATTGCCGAGCGCCTTGGCGTTTCGGTATCGCGGGTGCGCCAGTACATCGCCCAAGGCATG CGCCAGTGCTACGTGGCCTTGTACGGGGAGCCGACGTGA Protein sequence : MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGLMFDHFRRAA LEQAYLAELALIPEAEQPSPEMQHLILEDLKAIDRLLGKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGM RQCYVALYGEPT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 6e-29 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PP_0352 | NP_742519.1 | RNA polymerase sigma factor | VFG1049 | Protein | 2e-29 | 47 |
