Gene Information

Name : PP_3577 (PP_3577)
Accession : NP_745714.1
Strain : Pseudomonas putida KT2440
Genome accession: NC_002947
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 4058667 - 4059179 bp
Length : 513 bp
Strand : -
Note : identified by match to PFAM protein family HMM PF00776

DNA sequence :

ATGATCGACGCCGCGCCGCCACCGGAGCCTGGCCTGCCTGCCCTGTACCGGGAGCATCGCGGCTGGCTTGAAGCCTGGCT
GCGCCGGCGTATGGGCAATGCCTGGGATGCCGCCGACCTCAGCCAGGATACTTTTCTGCGCATTCTGGCCAGCGCCCAGC
CGCTGGCAGACATACGCGAACCGCGTGCCTACCTGCTGACTGTGGGCAAGCGTTTGCTCAGCAACTTCCACCAGCGACGT
AGCCTGGAGCAGGCCTACCTTGATGCGTTGGCGCAGTTGCCCGAGCAACACGTGCCGTCGCCAGAACAGCGCTGGGTACT
GCTCGAAACCCTGCAAGCACTGGATGAATTGCTCGACGGCCTCAAGCCGGCGATACGCAAGGCCTTTCTCTGGAGCCAGC
TGGAAGGCTTGGGCTACGCCGAAATTGGCCAGCGCCTGGGCGTCTGCCAGCGCTCAGTGAAACGCTACATGGCGCAGGCT
TACGAACATTGCCTGTTGGCCGAGTTGCAATGA

Protein sequence :

MIDAAPPPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSNFHQRR
SLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQA
YEHCLLAELQ

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	1e-32	53

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PP_3577	NP_745714.1	ECF subfamily RNA polymerase sigma factor	VFG1049	Protein	4e-33	53