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Name : ccmF (PP_4322) Accession : NP_746437.1 Strain : Pseudomonas putida KT2440 Genome accession: NC_002947 Putative virulence/resistance : Unknown Product : cytochrome C biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 4912709 - 4914697 bp Length : 1989 bp Strand : - Note : identified by match to TIGR protein family HMM TIGR00353 DNA sequence : ATGAACGCAGCACTGGTAGTCCCCGAACTGGGCCAGTTGGCGATGATTCTGGCCATCTGCTTTGCCGTCGTACAGGCCAG TGTGCCGTTGCTTGGCGCGTGGCGTGGCGACAGCCTGTGGATGAGCCTGGCGCGGCCGGCAGCCTGGGGGCAGTTCGCCT TCCTGGCGTTTGCCTTTGCCTGCCTGACCCATGCCTTCATGACAGACAATTTCTCGGTCGCCTATGTGGCCAGCAACTCC AACAGCGCCTTGCCCTGGTACTACAAGTTCAGTGCGGTGTGGGGCGCCCATGAGGGTTCGTTGCTGCTTTGGGCGCTGAT CCTTGGCGGCTGGACCTTTGCCGTGTCGGTGTTCTCCCGGCAGTTGCCGCAGGTGATGCTGGCCCGCGTGCTGGCGGTAA TGGGCATGATCAGCGTGGGCTTCCTGAGCTTCCTGATCATTACTTCCAACCCGTTCCAGCGCCTGCTGCCGCAGGTGCCG ACCGATGGCCGTGACCTCAACCCGCTGTTGCAGGACTTTGGCCTGATCGTTCACCCACCCATGCTCTACATGGGCTATGT GGGCTTCTCGGTGGCTTTCGCGTTCGCCATTGCCGCCTTGCTCGGCGGCCGGCTGGACGCTGCCTGGGCGCGCTGGTCGC GGCCGTGGACCATCGTCGCCTGGGCTTTCCTGGGTGTTGGCATCACCTTGGGGTCGTGGTGGGCCTACTACGAACTGGGC TGGGGTGGCTGGTGGTTCTGGGACCCGGTGGAAAACGCCTCGTTCATGCCTTGGCTGGTGGGCACCGCACTGATCCACTC GCTGGCGGTGACCGAGAAACGCGGGGTGTTCAAGAGCTGGACCGTGCTGCTGGCAATTGCCGCATTCTCCCTGAGCCTGC TGGGTACCTTCCTGGTGCGTTCCGGAGTGCTGACCTCGGTGCACGCGTTTGCCGCCGACCCGTCGCGGGGTATTTTCATC CTGTTTTTCCTGCTGTTCGTGGTCGGCGGCTCGCTCACCCTGTTCGCCCTGCGCGCACCGGTGGTCAAGAGCCAGGTCGG TTTCGCCCTGTGGTCGCGTGAAACGCTGCTGCTGGCCAACAACCTGGTGCTGGTGGTCGCGGCTTCGATGATTCTGCTCG GTACCCTGTACCCATTGGTGCTCGATGCCCTGACCGGGGCCAAGCTGTCGGTCGGCCCGCCCTATTTCGACGCCTTGTTC CTGCCACTGATGGCGCTGCTGATGGTGGTGCTGAGCGTGGGCGTGGTGGTGCGCTGGAAGGACACCCCGGGCAAATGGTT GGTCAGCATGATGACCCCGGTATTGATCGGCAGTGCCATCCTTGCACCGGTTGCCGGCTTTATCGTCGACGACTTCGACT GGCCGACGCTGACGGCCTTCGCCCTGGCCGCCTGGGTAGTGCTTGGCGGGCTGCGTGACATTTTCGACAAGACCCGCCAC AAGGGCCTGGTCAAAGGCCTGCCGGGCCTGGGCCGCAGCTACTGGGGCATGCAACTGGCGCACCTGGGCCTGGCGGTGTG TGCGCTGGGCGTGGTGCTGTCCAGCAACAACAGCGCCGAGCGCGACCTGCGCATGGCGCCGGGCGAAAGCGTGGAGCTGG GTGGCTACCACTTCCTGTTCCAGGGCGCCAAGCACTTCGAGGGGCCGAACTTCATCTCTGACAAGGGCACCATCGTGGTC AGCCGCGAGGGCCGTGAAGTGACCACACTGTACCCAGAGAAGCGCCTGTACACCGTGCAACAGTCGATGATGACCGAAGC GGGCATCGACGCCGGCTTTACCCGCGACCTGTACGTCGCGCTTGGCGAGCCACTGGAGAATGGCGCCTGGGCTGTGCGCG TACATATTAAGCCTTACGTCCGCTGGATCTGGCTGGGCGGTCTGCTGACCGGCCTGGGCGGGTTGCTGGCGGCCCTCGAC CGGCGCTACCGCGTCAAGGTCAAGACCCGGGTGCGTGATGTCCTGGGCGTGTCTGGAGCAGCTGCATGA Protein sequence : MNAALVVPELGQLAMILAICFAVVQASVPLLGAWRGDSLWMSLARPAAWGQFAFLAFAFACLTHAFMTDNFSVAYVASNS NSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISVGFLSFLIITSNPFQRLLPQVP TDGRDLNPLLQDFGLIVHPPMLYMGYVGFSVAFAFAIAALLGGRLDAAWARWSRPWTIVAWAFLGVGITLGSWWAYYELG WGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFAADPSRGIFI LFFLLFVVGGSLTLFALRAPVVKSQVGFALWSRETLLLANNLVLVVAASMILLGTLYPLVLDALTGAKLSVGPPYFDALF LPLMALLMVVLSVGVVVRWKDTPGKWLVSMMTPVLIGSAILAPVAGFIVDDFDWPTLTAFALAAWVVLGGLRDIFDKTRH KGLVKGLPGLGRSYWGMQLAHLGLAVCALGVVLSSNNSAERDLRMAPGESVELGGYHFLFQGAKHFEGPNFISDKGTIVV SREGREVTTLYPEKRLYTVQQSMMTEAGIDAGFTRDLYVALGEPLENGAWAVRVHIKPYVRWIWLGGLLTGLGGLLAALD RRYRVKVKTRVRDVLGVSGAAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 1e-110 | 57 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 7e-103 | 57 |
