|
Name : clpB (MCA3106) Accession : YP_115493.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Unknown Product : ATP-dependent Clp protease, ATP-binding subunit ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 3293305 - 3295884 bp Length : 2580 bp Strand : - Note : identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861 DNA sequence : ATGCGAATGGACAAACTGACCAGCAAATTTCAGGCGGCCCTCGCCGATGCCCAGAGCCTGGCGCTCGGACGTGATCATCA GTTCATCGAAGCGGTGCACGTGATGTCGGCGCTGCTCGATCAGGAAGGCAGTACGGTGCGGCCGCTGCTGATTCAGGCCG GAGCCGACGTGCCCCAACTGCAGCAGGCCTTGGGTGCGGCGCTGGAGCGTCTGCCGGTGGTGGAAGGCGTCGGCGGGGAC GTGCAGATTTCGGCCGAGCTGTCGCGGGTGCTGAACCTGACCGACAAACTCGCCCAGAAACGCGGTGACCAGTTCATCAC CAGCGAGATGTTCGTGCTGGCGGCGCTGGAATCGCGCGGCGAACTTGCCGAGCTCCTGCGCAAGGCCGGCTTGACCAAGG AAGCCTTGGAACACGCGATCCAGGCGATGCGTGGCGGCCAGGCGGCGGATGATCCGAACGTGGAGGACCAGCGTCAGGCC TTACAGAAATACACTATCGATCTGACCGAGCGTGCCGAACGCGGCAAGCTCGATCCGGTGATCGGCCGGGACGACGAAAT CCGCAGGACCATTCAGGTGCTGCAGCGGCGCACCAAGAACAATCCGGTGCTGATCGGCGAACCGGGCGTGGGCAAGACGG CCATCGTCGAGGGATTGGCCCAGCGCATCGTCAACGGTGAAGTGCCGGAAGGCGTCAAGGGCAAGCGCCTGCTGGCTCTG GACATGGCGGGGCTGATCGCCGGGGCGAAGTTCCGTGGTGAGTTCGAGGAGCGGCTGAAGGGCGTCCTCAATGACATCGC CAAGCAGGAAGGCCGCGTCATCCTGTTCATCGACGAGTTGCATACGATGGTCGGCGCCGGCAAGGCGGAAGGGGCCATGG ATGCCGGCAACATGCTCAAGCCGGCACTGGCGCGCGGGGAATTGCACTGCATCGGGGCCACCACGCTGGACGAATACCGC AAATACATAGAAAAGGATGCGGCGCTGGAACGGCGCTTCCAGAAGGTGCTGGTGGATGAGCCGACCGTCGAGGACACCAT TGCCATTCTGCGGGGCCTGAAAGAACGCTACGAGGTCCATCACGGCGTCACCATCACCGATCCGGCGATCGTGGCCGCCG CCACGCTGTCGCACCGTTACATCACCGACCGCCAGTTGCCGGATAAGGCCATCGACCTGGTGGACGAGGCCGCCAGCCGC ATCCGCATGGAGATCGATTCCAAGCCGGAGGAAATGGACCGGCTCGACCGCCGTCTGATCCAGCTCCGGATCGAACGCGA AGCTTTGAAGAAAGAGACCGACGAGGCATCGAAGAAGCGGCTGGAGGCACTGGAAGGCGAGATCGGCAAGCTGGAAAAGG AATACGCCGATCTGGAGGAGATCTGGAAGAGCGAAAAGGCCCGGCTCTCCGGCGCCGCCAGCATCAAGGAGGAACTGGAA AAGGCCCGGCTCGACCTGGACAACGCCAAGCGCAGCGGCGATCTGACCCGCGCCGGCCAGATCCAGTATGAACGGATCCC GGCTTTGGAAAAACGGCTGGCCGTGGCCGAAGCCGGTGAGGATAGCGAGTTCCGCCTGCTGCGCAACAAGGTCACCGACG AGGAAATCGCCGAGGTCGTTTCCAAATGGACCGGAATTCCGGTGGCGAAGATGCTCGAGGGTGAGCGTGAGAAACTTTTG CACATGGAGGAGAACCTGAGCCGGCGGGTGGTTGGCCAACAGGAGGCGATTACCGCAGTGGCCAACGCCATACGCCGGTC CCGCGCGGGTCTGGCCGATCCCAACCGGCCGAATGGATCATTCCTGTTCCTGGGGCCGACCGGCGTGGGCAAGACCGAAT TGTGCAAGGCGCTGGCCGAATTCCTGTTCGACACCGACGAGGCGATGGTACGCATCGACATGTCGGAATTCATGGAAAAG CATTCGGTCGCCCGCCTGATCGGGGCACCGCCCGGCTATGTCGGGTACGAAGAGGGCGGTTATCTCACCGAGGCCGTGCG GCGCAAGCCCTATTCCGTGATCCTGCTGGACGAAGTCGAAAAGGCCCATCCGGACGTCTTCAACGTCTTGCTGCAGGTGC TGGACGATGGCCGCCTCACCGATGGCCATGGCCGTACTGTGGATTTCCGCAATGCGGTGGTGGTGATGACCTCCAACCTG GGCTCCAATCGCATCCAGGAGTTGGCGGGGGAGGCGCATTACGCCGAGATGAAGGCCGAGGTCATGGAAATCGTGGGTCA GTATTTCCGGCCGGAGTTCATCAACCGCATCGACGAGGCGGTGGTGTTCCATCCCTTGGGGCGGGAGCAGATCCGCGCCA TCGCCCGGCTCCAGGTCCGCCATCTCCAGGAACGCCTGGAGGCGCGCGAACTGTCCCTCGTGGTATCGGATGCTGCGCTG GACCTGCTCGGCGAGGCCGGATTCGACCCGGTCTATGGGGCGAGGCCGCTGAAGCGGACCATTCAGCAGGAACTGGAAAA TCCTCTGGCGCTGGACATACTCGCCGGCCGCTTCGCAGCCGGCGACGTGATCGGGGTGGATGTCGAGAACGGAAAGCTGC AATTCTCCCGGATGGGCTGA Protein sequence : MRMDKLTSKFQAALADAQSLALGRDHQFIEAVHVMSALLDQEGSTVRPLLIQAGADVPQLQQALGAALERLPVVEGVGGD VQISAELSRVLNLTDKLAQKRGDQFITSEMFVLAALESRGELAELLRKAGLTKEALEHAIQAMRGGQAADDPNVEDQRQA LQKYTIDLTERAERGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGVKGKRLLAL DMAGLIAGAKFRGEFEERLKGVLNDIAKQEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR KYIEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYEVHHGVTITDPAIVAAATLSHRYITDRQLPDKAIDLVDEAASR IRMEIDSKPEEMDRLDRRLIQLRIEREALKKETDEASKKRLEALEGEIGKLEKEYADLEEIWKSEKARLSGAASIKEELE KARLDLDNAKRSGDLTRAGQIQYERIPALEKRLAVAEAGEDSEFRLLRNKVTDEEIAEVVSKWTGIPVAKMLEGEREKLL HMEENLSRRVVGQQEAITAVANAIRRSRAGLADPNRPNGSFLFLGPTGVGKTELCKALAEFLFDTDEAMVRIDMSEFMEK HSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGHGRTVDFRNAVVVMTSNL GSNRIQELAGEAHYAEMKAEVMEIVGQYFRPEFINRIDEAVVFHPLGREQIRAIARLQVRHLQERLEARELSLVVSDAAL DLLGEAGFDPVYGARPLKRTIQQELENPLALDILAGRFAAGDVIGVDVENGKLQFSRMG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 4e-104 | 43 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 6e-105 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 4e-105 | 41 |
