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Name : ccmF (MCA0418) Accession : YP_112949.1 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 417110 - 419083 bp Length : 1974 bp Strand : - Note : identified by similarity to SP:P33927; match to protein family HMM PF01578; match to protein family HMM TIGR00353 DNA sequence : ATGATCGCCGAACTCGGCCACATCGCCCTGATCATGGCCCTCCTGATGGCCCTCCTGCAGGGCGCCTTCCCGCTGATGGG CGCCTCCCAGGGCGTGGACATCTGGATGAGCGTCGCCAAGCCGGCCGGCCGCGCGCAGTTCCTGTTTCTGCTGGTATCCT TCGGCGCCCTCACCGCCTGCTTCGTCAACAACGATTTTTCGGTGGAATACGTCGCCCGCAACTCGAACTCGGCCCTGCCG CTCTACTATCGCATCGCCGCGGTATGGGGCTCACATGAGGGGTCGATGCTGCTGTGGGCCACGATCCTGGGTCTCTGGAC AGCGGCGGTGACGGTGTTCAGCCGCAGCCTGTCGGAAGACTTTCTGGCCCGGGTGCTGGGCATCATGGGGCTGGTGAGCG TCGGCATCCTGCTGTTCATCCTGTTCACCTCGAACCCGTTCGAGCGGCTGACACCGGTGCCGCCCGACGGCAACGACCTG AATCCGCTGCTGCAGGATTTCGGCATGACGGTGCATCCGCCCATGCTGTACATGGGCTATGTGGGACTGAGCGTAGCCTT CGCCTTCGCCATCGCCGCCCTGCTGGGCGGCTCGCTGGACTCGGCATGGGCGCGCTGGTCACGGCCCTGGACCCTGGTGG CCTGGCTGTTCCTGACCGGCGGCATCACCCTCGGCTCATGGTGGGCCTATTACGAACTGGGCTGGGGCGGCTGGTGGTTC TGGGACCCGGTGGAAAACGCCTCCTTCATGCCCTGGCTGGTCGCCACCGCACTTATCCACTCGCTGGCCGTCACCGAGAA GCGCGGCGCCTTCAAGGCCTGGACCGTGCTGCTGGCGATCTTCGCCTTTTCGCTGAGCCTGCTGGGCACCTTCCTGGTAC GTTCCGGCGTGCTGACCTCCGTGCATGCCTTCGCTTCCGACCCCACCCGCGGCCTGTTCATCCTGATCCTGCTGGCCATC GTGGTGGGCGGTTCGCTGCTGGTTTACACCGTGAAGGCGCCGGCCGTGCGCGATGTGGCGCGCTATAGCCTGGTGTCCAA GGAAAACCTGCTGCTGCTCAACAACATCCTGCTGGTGACCGCCTCCGGCAGTATCCTGCTCGGCACCCTTTATCCGCTGA TCCTGGACGCGCTGAAGCTGGGCAAGATTTCGGTCGGCCCGCCGTATTTCGGCACGGTGTTCGCTCCGCTGATGGCGCCG ATCTTCCTGCTCGCCGGTATCGGGCCGATGTTCGCCTGGCGGGAGAGCCCGATCGGCCGCATCCTGCACCGGGTCCGCTA TCTGTTCCCGGCGAGCTTCGCGGCCGGCATCGCGCTCGCCGCCCTGGCCTGGGACGAGACCGACTTCAAGATGATGGCCG GGCTGGGCTGCGCGTTCTGGCTGGCGGCGAGCGCCTGCCTCAGCCTGTGGAGCCGGATCCGGCTGCGCGACGGCTGGCTC GAAGGACTGCGCGCCCAGTCGCCCAGCGTCTACGGGATGACCGCCGCGCATCTCGGCGTCGCGGTGTTCCTGGTGGGCGC CGTGCTGTCCGACCGCCTGAGTCAGGAAAAGCTGGTACGCATGGCGCCTGGCGACAGCGTGATGCTGGCCGGCTACGCCT TCCACTTCCTCGGCACGGAGACCGTGCAGGGGCCGAACTTCTCGGCCCAGCAGGCCACCTTCCGGGTGGAGCGGGACGGC GAAAGCCTGGAACTTCGGCCCCAGAAGCGGAACTACAAGGTGCAGCGCAACATGATGACCGAAGCTGCGATAGACCCCGG TCTGTCCCGCGATCTCTATGTCGCCCTCGGCGAGCCACTGGACGGGAACGCCTGGAGCGTGCGGCTCTACGTCAAACCGT TCATCCGCTGGATCTGGGCCGGCGGCCTGTTCATGATCGCCGGGGGCATCCTGTCCGTCAGCGACCGACGCTACCGCCTG CCGCTGCCTGAAACCCGCGCAGTTGCCGGACGCGCCGCGTCCCGTGCAATTTGA Protein sequence : MIAELGHIALIMALLMALLQGAFPLMGASQGVDIWMSVAKPAGRAQFLFLLVSFGALTACFVNNDFSVEYVARNSNSALP LYYRIAAVWGSHEGSMLLWATILGLWTAAVTVFSRSLSEDFLARVLGIMGLVSVGILLFILFTSNPFERLTPVPPDGNDL NPLLQDFGMTVHPPMLYMGYVGLSVAFAFAIAALLGGSLDSAWARWSRPWTLVAWLFLTGGITLGSWWAYYELGWGGWWF WDPVENASFMPWLVATALIHSLAVTEKRGAFKAWTVLLAIFAFSLSLLGTFLVRSGVLTSVHAFASDPTRGLFILILLAI VVGGSLLVYTVKAPAVRDVARYSLVSKENLLLLNNILLVTASGSILLGTLYPLILDALKLGKISVGPPYFGTVFAPLMAP IFLLAGIGPMFAWRESPIGRILHRVRYLFPASFAAGIALAALAWDETDFKMMAGLGCAFWLAASACLSLWSRIRLRDGWL EGLRAQSPSVYGMTAAHLGVAVFLVGAVLSDRLSQEKLVRMAPGDSVMLAGYAFHFLGTETVQGPNFSAQQATFRVERDG ESLELRPQKRNYKVQRNMMTEAAIDPGLSRDLYVALGEPLDGNAWSVRLYVKPFIRWIWAGGLFMIAGGILSVSDRRYRL PLPETRAVAGRAASRAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 6e-139 | 57 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 5e-112 | 54 |
