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Name : secD (MCA0683) Accession : YP_113194.2 Strain : Methylococcus capsulatus Bath Genome accession: NC_002977 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 713696 - 715546 bp Length : 1851 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCGAAACCGTTTTCCCTTATGGAAAAACCTGATGGTCGCAGCCGTGTTGATCCTCGGGATCATTTACGCGCTGCCCAA TTTCTTCGGTGAAGACCCATCCGTTCAATTGTCGGCGGTTCGTGCGGCGAAGGTCGATGACAGCCTCAAGGTCCAGGTGC AGGGGCTGCTGGATGCGGCCGGTCTCAAGGCGAAGGCCGTGGAGATGGCTGACAAGCGCATGCTGATCCGGTTCGGTGAT ACCGATTCGCAGCTCAAGGCGTCCGACGTTCTGAACGAGAAGCTGGGGGATGCCTACACGGTGGCCTTGAATCTGGCGCC GTCGACGCCTTCCTGGCTGCGCGCGTTCGGTGCCAAGCCCATGTATCTGGGACTGGACTTGCGGGGCGGTGTGCATTTCC TGCTTCAGGTCGACATGGATGCTGCCATCAAGCAGGCGGAAGACCGTTACGCGGAAGACGCCCGCAGCCTGCTGCGCGAA AACAAGATTCGTTACCAGTCGGTGGAAAAACAGAACGGCGTGATCCAGGTCCGGCTGCCGGATCCCAATGCCCTGTCGCA GGCGCAGGTGCTGCTGAAGCGCGAACTGCGCGGGTTACAGATCGACGTCAAGGAAGGCGAAAACCTGCTCGAAGGACGCT TGTCCGAAGTCGAGCGGCGCGAGATCAAGCGCTTCGCCGTAGCCCAGAACACGACGACGCTGCGCAACCGTGTCAACGAG CTCGGTGTGGCCGAACCCGTGATCCAGCAGCAGGGCGAGGATCGCATCGTCGTCCAGTTGCCCGGCGTCCAGGATACCGC GCGGGCCAAGGAAATCCTCGGCGCCACCGCGACTCTGGAGTTCCGGCTCGTCGACAACGAACACCCGGTGCCGGCCGAGG GGGAGAAAGCGCCGTTGGGCTCGCATCTCTACCGCGACCGTCAGAACCGTCCGGTTCTGTTGGAGCGCAAGATCATCGTC ACCGGCGACCAGGTCGTCGACGCGGCTTCCGGCATCGACCAGCAGAGTGGCCAGCCGGCGGTCTACGTCACGCTCAACAG CGTGGGCGCCAAGAAGATGGGCGACACCACCCGCGAAAACGTCGGCCGCGCCATGGCGGTGGTCTACATCGAGAACAAGT CCGAGACCAAGGAGGTCGACGGCCAGAAGGTGACGACCAAGAAAAAGGTCGAGGAGGTCATCAACATCGCCACCATCCGC GACCGTTTCAGCAAACGTTTCCAGATCACCGGCCTGGACAGCACCGAGGAGGCGCGGAACCTGGCTCTCCTGCTGCGGGC GGGGGCTCTGGCGGCACCGGTGGACATCGTCGAGGAGCGCACCGTGGGCCCCAGCATGGGCAAGGAAAACATCGACCGCG GCGTCAAGTCCAACGGCTACGGCTTCATCGCCATCGCGGTGTTCATGATCCTCTATTACCGGATGTTCGGCCTGTTCTCC ATCCTGGCGCTGGCGGCGAATGTCCTCCTGCTGGTTGCCGTGCTGTCGCTGCTGCAAGCGACCCTGACGCTGCCGGGTTT GGCGGGTATCGCTCTGACCGTGGGTATGGCCATCGACGCCAACGTGCTCATCAACGAACGCATCCGCGAGGAACTGCGGG CGGGCAGTACGCCCCATGCCGCCATCCATGCAGGCTATGAGCGCGCATTCGCCACGATTCTGGACTCCAACGTCACGACC TTCGTCGCCGGCGTGGCCCTGTTCCTGCTTGGGGCAGGCCCCGTACGGGGCTTCGCGCTGGTGTTGTGCATCGGCATCCT GACCTCCATGTTCAGCGCCGTCCTGGTGTCCAGGGCGCTGGTCAACTTCACCTATGGCCGGCAGCGCAAGCTGGTCAAGA TCGCAGTCTGA Protein sequence : MRNRFPLWKNLMVAAVLILGIIYALPNFFGEDPSVQLSAVRAAKVDDSLKVQVQGLLDAAGLKAKAVEMADKRMLIRFGD TDSQLKASDVLNEKLGDAYTVALNLAPSTPSWLRAFGAKPMYLGLDLRGGVHFLLQVDMDAAIKQAEDRYAEDARSLLRE NKIRYQSVEKQNGVIQVRLPDPNALSQAQVLLKRELRGLQIDVKEGENLLEGRLSEVERREIKRFAVAQNTTTLRNRVNE LGVAEPVIQQQGEDRIVVQLPGVQDTARAKEILGATATLEFRLVDNEHPVPAEGEKAPLGSHLYRDRQNRPVLLERKIIV TGDQVVDAASGIDQQSGQPAVYVTLNSVGAKKMGDTTRENVGRAMAVVYIENKSETKEVDGQKVTTKKKVEEVINIATIR DRFSKRFQITGLDSTEEARNLALLLRAGALAAPVDIVEERTVGPSMGKENIDRGVKSNGYGFIAIAVFMILYYRMFGLFS ILALAANVLLLVAVLSLLQATLTLPGLAGIALTVGMAIDANVLINERIREELRAGSTPHAAIHAGYERAFATILDSNVTT FVAGVALFLLGAGPVRGFALVLCIGILTSMFSAVLVSRALVNFTYGRQRKLVKIAV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-104 | 45 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-104 | 45 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-104 | 45 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-104 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-104 | 45 |
