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Name : rpoB (Atu1956) Accession : NP_354931.2 Strain : Genome accession: NC_003062 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1927198 - 1931334 bp Length : 4137 bp Strand : - Note : - DNA sequence : ATGGCTCAGACCCTTTCGTTTAACGGTCGCAGGCGCGTACGCAAGTTTTTCGGCAAAATTCCAGAAGTAGCGGAAATGCC GAACCTCATCGAGGTTCAGAAGGCTTCGTATGACCAGTTTCTCATGGTTGACGAGCCCAAGGGTGGCCGTCCCGACGAGG GATTGAATGCCGTATTCAAATCCGTATTCCCGATCACCGATTTTTCCGGCGCCTCCATGCTCGAATTCGTGTCTTACGAA TTCGAAGCGCCGAAGTTCGACGTCGAGGAATGCCGTCAGCGCGATCTGACCTATGCAGCGCCGCTGAAGGTGACGCTGCG CCTCATCGTGTTCGATATCGACGAAGATACCGGCGCGAAGTCCATCAAGGACATCAAGGAACAGTCCGTCTACATGGGCG ACATGCCGCTCATGACCAATAACGGCACGTTCATCGTCAACGGCACCGAGCGCGTCATCGTTTCGCAGATGCACCGTTCC CCGGGCGTGTTCTTCGACCACGACAAGGGCAAAAGCCATTCTTCCGGCAAGCTGCTTTTTGCTGCCCGCGTGATCCCGTA TCGCGGTTCTTGGCTCGACATCGAGTTCGACGCCAAGGACATCGTCTATGCGCGTATCGACCGTCGCCGCAAGCTGCCCG TGACCTCGCTGCTGATGGCGCTCGGCATGGATGGCGAAGAAATCCTGTCGACCTTCTACACCAAGGCGACCTATGAGCGC TCCGGCGATGGCTGGCGCATTCCGTTCCAGCCTGAAGCGCTGAAGAATGCCAAGGTCATCACCGACATGATCGACGCCGA CACCGGCGAAGTCGTTGTCGAAGGTGGCAAGAAGCTGACCCCGCGCCTCATCCGCCAGCTCGTCGACAAGGGCCTGAAGG CGCTGAAGGCGACCGACGAAGATCTCTACGGCAACTACCTGGCCGAAGACATCGTCAATTACTCGACGGGTGAGATCTAT CTCGAAGCCGGCGACGAAATCGACGAGAAGACGCTCGGCCTCATTCTGCAGTCCGGCTTTGACGAGATTCCGGTACTCAA CATCGACCACGTCAATGTTGGCGCCTATATCCGCAACACGCTGTCTGCGGACAAGAACCAGAACCGCCAGGAAGCGCTGT TCGACATCTACCGCGTCATGCGTCCCGGCGAGCCGCCGACCATGGATTCGGCGGAGGCGATGTTCAACTCGCTGTTCTTC GATGCCGAACGTTACGATCTCTCGGCTGTTGGCCGCGTGAAGATGAACATGCGTCTCGACCTCGACGCGGAAGACACCGT GCGCACGCTGCGCAAGGAAGACATCCTCGCGGTCGTGAAGATGCTGGTCGAACTGCGTGACGGCAAGGGCGAAATCGACG ACATCGACAACCTCGGCAACCGCCGTGTCCGTTCTGTCGGCGAGCTGATGGAAAACCAGTATCGTCTGGGGCTTCTGCGC ATGGAACGTGCGATCAAGGAACGTATGTCCTCGATCGAAATCGACACCGTGATGCCGCAGGACCTGATCAACGCGAAGCC GGCAGCCGCCGCCGTTCGCGAATTCTTCGGTTCCTCGCAGCTGTCGCAGTTCATGGACCAGGTGAACCCGCTTTCGGAAA TCACCCACAAGCGCCGTCTTTCGGCTCTTGGACCGGGTGGTCTGACCCGTGAGCGCGCCGGCTTCGAAGTCCGCGACGTT CACCCGACCCATTACGGCCGTATTTGCCCGATCGAAACGCCTGAAGGCCCGAACATCGGTCTGATCAACTCGCTTGCAAC CTTTGCCCGTGTGAACAAGTACGGCTTTATCGAAAGCCCGTACCGCAAGATCATCGACGGCAAGGTGACAACCGACGTGA TCTACCTCTCCGCCATGGAAGAGGCCAAGTACTACGTCGCACAGGCCAATGCCGAACTCGATGGCGAAGGCGCCTTCACG GAAGAGTTCGTTGTTTGCCGTCATTCGGGCGAAGTCATGCTCGCACCGCGCGACAACATCAACCTGATGGACGTTTCGCC GAAGCAGCTCGTTTCGGTCGCAGCGGCTCTCATTCCGTTCCTGGAAAACGACGACGCCAACCGCGCTCTCATGGGCTCGA ACATGCAGCGTCAGGCCGTTCCGCTTCTGCGCGCCGAGGCACCGTTCGTCGGTACCGGCATGGAGCCGATCGTTGCCCGT GACTCCGGCGCTGCCATTGCAGCCCGTCGTGGCGGTGTTGTCGATCAGGTGGATGCGACCCGTATCGTTATCCGGGCTAC GGAAGATCTCGATGCCGGCAAATCCGGTGTTGATATCTACCGTCTGCAGAAGTTCCAGCGTTCGAACCAGAACACCTGCG TCAACCAGCGTCCGCTGGTTTCCGTCGGTGACGCCATCTCCAAGGGTGACATCATCGCGGACGGTCCGTCGACCGACCTC GGCGATCTGGCACTCGGCCGTAACGCGCTCGTCGCGTTCATGCCCTGGAATGGCTACAACTACGAAGACTCGATTCTGAT GTCGGAGCGTATCGTTTCCGACGACGTGTTCACCTCCATCCACATCGAAGAATTCGAAGTGATGGCGCGTGACACGAAGC TTGGTCCGGAAGAAATCACGCGCGACATTCCGAACGTTTCGGAAGAAGCGCTGAAGAACCTCGACGAAGCCGGTATCGTC TACATCGGTGCGGAAGTTCAGCCGGGCGACATCCTCGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCCGGA AGAAAAGCTTCTGCGCGCCATCTTCGGTGAAAAGGCTTCCGACGTTCGCGACACGTCCATGCGCATGCCTCCGGGCACGT TCGGTACGATCGTGGAAGTCCGCGTCTTCAACCGTCACGGTGTGGAGAAGGACGAGCGCGCGATGGCTATCGAGCGCGAA GAGATCGAGCGTCTGGCGAAGGACCGCGACGACGAGCAGGCAATTCTCGACCGTAACGTCTACGGCCGCCTGATCGACAT GCTGCGTGGCCACGTTTCCATCGCTGGTCCGAAGGGCTTCAAGAAGGGCGTCGAGCTTTCCAACGCCGTCGTCTCCGAAT ATCCCCGCTCGCAGTGGTGGATGTTCGCGGTCGAGGACGAGAAGGCCCAGTCCGAACTGGAAGCACTTCGCGGCCAGTAC GACGAATCCAAGTCGCGCCTTGAACAGCGCTTCATGGACAAGGTCGAAAAGGTCCAGCGCGGCGATGAAATGCCTCCGGG TGTCATGAAGATGGTCAAGGTCTTCGTCGCTGTGAAGCGCAAGATCCAGCCGGGCGACAAGATGGCCGGCCGTCACGGTA ACAAGGGCGTCGTCTCGCGTATCGTTCCGGTCGAGGACATGCCGTTCCTCGAAGACGGCACGCATGTCGACATCTGCTTG AACCCGCTTGGCGTGCCTTCGCGCATGAACGTCGGCCAGATCCTCGAAACCCACCTCGCATGGGCATGCGCAGGCATGGG CAAGAAGATCGGCGAGATGCTCGAAGAGTATCGCAAGACGATGGACATCAGCGAGCTTCGTAGCGAGCTGACGGAAATCT ACGCGTCCGAGGCTAATGATGAGGTTCAGCGTTTCGATGACGACTCGCTGGTGAAGCTTGCCGAAGAAGCCAAGCGCGGT GTTTCCATCGCGACCCCGGTTTTCGACGGTGCGCATGAGCCTGACGTCGCCGCGATGCTGAAGAAGGCAGGTCTGCATGA ATCCGGTCAGTCCGTCCTTTATGACGGTCGTACCGGTGAGCCGTTCGACCGCAAGGTCACCGTCGGCTACATGTACATGA TCAAGCTGAACCACCTTGTCGACGACAAGATCCACGCTCGCTCGATCGGTCCTTACTCGCTCGTTACCCAGCAGCCGCTG GGCGGCAAGGCGCAGTTCGGCGGACAGCGCTTCGGGGAAATGGAAGTCTGGGCTCTGGAAGCATACGGCGCGGCTTACAC GCTGCAGGAAATGCTCACCGTCAAGTCGGACGACGTTGCCGGCCGCACCAAGGTCTACGAAGCGATCGTCCGTGGCGACG ACACCTTCGAGGCCGGTATCCCTGAGAGCTTCAACGTTCTCGTCAAGGAAATGCGGTCGCTCGGTCTGTCGGTCGAACTG GAGAACTCGAAGATCGAGAACCAGTCCGAGGACCAGCTGCCCGACGCGGCGGAATAA Protein sequence : MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFKSVFPITDFSGASMLEFVSYE FEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRS PGVFFDHDKGKSHSSGKLLFAARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYER SGDGWRIPFQPEALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDEDLYGNYLAEDIVNYSTGEIY LEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNTLSADKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFF DAERYDLSAVGRVKMNMRLDLDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFT EEFVVCRHSGEVMLAPRDNINLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR DSGAAIAARRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLVSVGDAISKGDIIADGPSTDL GDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIV YIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTIVEVRVFNRHGVEKDERAMAIERE EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWWMFAVEDEKAQSELEALRGQY DESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICL NPLGVPSRMNVGQILETHLAWACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQRFDDDSLVKLAEEAKRG VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLVDDKIHARSIGPYSLVTQQPL GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVEL ENSKIENQSEDQLPDAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 61 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 58 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| rpoB | NP_354931.2 | DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 57 |
