|
Name : clpB (Atu4177) Accession : NP_356471.2 Strain : Genome accession: NC_003063 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1298943 - 1301567 bp Length : 2625 bp Strand : + Note : - DNA sequence : ATGAATATTGATAAATACTCCGAGCGCGTTCGCGGTTTTCTGCAATCGGCGCAAACCTTTGCGCTCGCCGAAAATCATCA GCAGTTCTCGCCCGAACATGTTCTGAAAGTTCTGCTTGATGATGAGCAGGGCATGGCCGCATCGCTGATCGAGCGTGCGG GCGGCGACGCCAAGGAAGCGCGTCTCGCCAATGACGCGGCCCTTGCAAAATTGCCCAAGGTATCCGGCGGCAATGGCGGC CTTTCGCTGACGGCTCCGCTCGCCAAGGTATTTTCGACCGCAGAAGACCTTGCCAAGAAGGCCGGCGACAGTTTCGTGAC CGTCGAGCGTCTTCTGCAGGCGCTTGCGATCGAAAGCTCCGCTTCCACCTCGGCTTCCCTGAAAAAAGCGGGTGCGACCG CACAGGCGCTCAATCAGGTCATCAACGACATTCGCAAGGGCCGCACGGCCGATAGCGCCAATGCCGAACAGGGCTTTGAC GCGCTGAAGAAATATGCGCGCGACCTGACGGAGGAAGCCCGCGAGGGTAGACTCGACCCCGTCATCGGTCGTGACGACGA AATTCGTCGCACCATCCAGGTCCTGTCGCGCCGCACCAAGAACAATCCCGTGCTGATCGGTGAACCGGGCGTCGGTAAAA CGGCGATTGCCGAAGGCCTTGCGCTGCGCATCGTCAATGGCGACGTGCCGGAGAGCCTGAAGGACAAAAAGCTGATGGCG CTCGATATGGGCGCGCTGATCGCCGGTGCGAAATATCGCGGTGAGTTCGAAGAGCGCCTGAAGGCTGTGCTGAACGAGGT GCAGGCCGAAAATGGCGGCATCATCCTGTTCATCGATGAGATGCACACCCTGGTCGGCGCCGGCAAGGCCGATGGCGCCA TGGATGCGTCCAACCTGCTGAAACCTGCGCTTGCCCGCGGTGAGCTGCACTGCGTCGGCGCCACCACGCTCGATGAATAT CGCAAGCATGTGGAGAAGGATCCAGCCCTTGCCCGCCGTTTCCAGCCCGTTCTGGTGGATGAACCGAACGTCGAGGATAC GATCTCGATCCTGCGCGGTCTGAAGGAAAAATACGAACAGCACCACAAGGTCCGCATCTCGGATTCGGCCCTGGTTGCGG CTGCGACGCTTTCCAACCGTTACATTACCGACCGGTTTCTGCCCGACAAGGCAATCGACCTGATGGACGAGGCCGCTTCG CGTCTTCGCATGCAGGTGGATTCCAAGCCGGAAGAACTGGACGAACTGGATCGTCGCATCATCCAGCTGAAGATCGAGCG CGAAGCCCTGAAGCAGGAAACGGACCAGTCCTCCGTCGACCGTTTGAGGAAGCTCGAGGACGAACTGGCCGATACGGAAG AAAAGGCAGATGCGCTGACGGCCCGCTGGCAGGCGGAAAAGCAGAAGCTCGGCCACGCCGCCGACCTGAAGAAGCGGCTG GATGAAGCCCGAAACGAACTGGCAATCGCCCAGCGCAATGGCCAGTTCCAGCGTGCCGGCGAGTTGACCTACGGCATCAT TCCCGGCCTCGAAAAGGAACTGGCAGCGGCGGAAGCCCGCGATAGCAGCGGTGCCGGTTCGATGGTTCAGGAAGTGGTGA CGCCGGACAATATTGCCCATGTCGTCTCCCGCTGGACCGGCATTCCGGTCGACAAGATGCTGGAAGGCCAGCGCGAAAAG CTGTTGCGCATGGAAGACGAGCTCGCCAAGTCCGTTGTCGGGCAGGGTGAGGCCGTTCAGGCGGTGTCCAAGGCGGTTCG CCGTTCGCGCGCCGGCCTGCAGGATCCTAACCGGCCGATCGGTTCGTTCATCTTTCTCGGCCCGACGGGTGTGGGCAAGA CCGAGCTGACCAAGTCGCTCGCCCGCTTCCTGTTCGACGACGAAACCGCGATGGTCCGCCTCGATATGTCGGAATATATG GAGAAACACTCCGTTGCCCGGCTGATCGGTGCACCTCCGGGCTATGTCGGCTACGAAGAGGGCGGTGCCCTGACGGAAGC GGTTCGCCGCCGGCCCTATCAGGTCGTGTTGTTCGATGAGATCGAAAAAGCGCATCCGGATGTCTTCAACGTCCTGCTGC AGGTGCTGGATGATGGCCGCCTGACCGATGGCCAGGGCCGCACCGTCGATTTCAAGAACACCATCATCATCATGACCTCA AACCTCGGTTCGGAATTCATGACGCAGATGGGCGACAACGACGATGTGGATTCGGTTCGCGAACTTGTCATGGAACGGGT TCGGTCGCATTTCCGGCCGGAATTCCTCAACCGCATCGACGATATCATCCTGTTCCATCGCCTGCGGCGTGACGAAATGG GTGCGATCGTGGAAATCCAGTTGAAGCGCCTTGTCTCGCTTCTGGCCGATCGCAAGATCACGCTCGAACTGGATGAGGAT GCTCGCAGCTGGCTTGCCAACAAGGGTTACGATCCGGCTTATGGTGCGCGGCCGCTGAAGCGGGTGATCCAGAAATCGGT TCAGGACCGGCTGGCGGAAATGATCCTCGGCGGTGAAATCCCCGATGGTTCGCGGGTCAAGGTAACTTCGGGCACCGACC GGTTGCTGTTCAAGGTCAAGCCCGCCAAGGGTGAGGCCGAGACTGAAACGGCCGATGCGGCATAA Protein sequence : MNIDKYSERVRGFLQSAQTFALAENHQQFSPEHVLKVLLDDEQGMAASLIERAGGDAKEARLANDAALAKLPKVSGGNGG LSLTAPLAKVFSTAEDLAKKAGDSFVTVERLLQALAIESSASTSASLKKAGATAQALNQVINDIRKGRTADSANAEQGFD ALKKYARDLTEEAREGRLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKKLMA LDMGALIAGAKYRGEFEERLKAVLNEVQAENGGIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEY RKHVEKDPALARRFQPVLVDEPNVEDTISILRGLKEKYEQHHKVRISDSALVAAATLSNRYITDRFLPDKAIDLMDEAAS RLRMQVDSKPEELDELDRRIIQLKIEREALKQETDQSSVDRLRKLEDELADTEEKADALTARWQAEKQKLGHAADLKKRL DEARNELAIAQRNGQFQRAGELTYGIIPGLEKELAAAEARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEGQREK LLRMEDELAKSVVGQGEAVQAVSKAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKSLARFLFDDETAMVRLDMSEYM EKHSVARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTS NLGSEFMTQMGDNDDVDSVRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDED ARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPDGSRVKVTSGTDRLLFKVKPAKGEAETETADAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 7e-174 | 52 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-112 | 42 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 6e-110 | 41 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 8e-110 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | NP_356471.2 | ATP-dependent Clp protease, ATP-binding subunit | VFG2084 | Protein | 3e-115 | 44 |
| clpB | NP_356471.2 | ATP-dependent Clp protease, ATP-binding subunit | VFG2076 | Protein | 2e-126 | 43 |
