Gene Information

Name : clpB (Atu4344)
Accession : NP_356311.2
Strain :
Genome accession: NC_003063
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease, ATP-binding subunit
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1477260 - 1479938 bp
Length : 2679 bp
Strand : +
Note : -

DNA sequence :
ATGTCGCATATCGATCTCAATCGCCTCGTTGGAGCGCTTGAGCCAGACCTGCGCGTTACCCTCGAAGCTGCGGCTTCCGT
TGCGGTGCGTATGGGGCACAGGTACGTGGATATACCGCATTGGCTGCTGGCGGTTGTAGATGCCGGTATCTATGCGGAAA
CATTCGACGAATTAAAAATTCCACTTCCGGTATTGAAGGCTGAAATCGGCCGCAGTCTGGAAGAGGCCATTATCGGCGAC
GGGGAGGCCTTGTCGCTCTCCCAGAACATCCTCACGGCAGCCCGGGAGGCATGGATTCTTGCGTCGCTGGAGGCTGGCCG
TGACCGCGTGACGCTTTGCGATCTCCTGTTGGCGATGGATGAGGAAACCTCACTTCGCTCCTTTGTCCGCTCGGCATTTC
CGTCTCTCAAGGCGATGGATCGCGGTGCGCTTGAGCGTCTTCGCAGCTCGGCCGAGAACGGCGCAGGCGTGGATGTTCCT
TCCGCGCTGACAAGTTCAGGAGAGGCAGGCTCGGCACAGGCCGCCGGCCAGAATGATTTCTTGCGCCTTTACACCCACGA
CATGACCACCGATGCCCGCAACGGCAAGGTCGATCCTGTTATCGGCCGCGATGATGAGTTGCGCCAGCTCGTTGATATTC
TGACCCGCCGCCGACAGAACAATCCTATTCTGGTGGGCGAGGCCGGCGTGGGCAAGACCGCGGTCGCCGAAGCGCTGGCG
TTGGAAATCGCCTCCGGCAACGTTCCGGAGAAACTGCGCAATGTCTGCCTGCTGAACCTCGATATTTCGCTGCTGCAGGC
CGGTGCCGGCGTGAAAGGTGAGTTCGAGCGGCGCCTGCACGGCGTGATCGATGCGGTCAAGCGTTCGGCCGAACCGGTCA
TCCTGTTCATCGATGAGGCCCATGGCCTTGTTGGCGCGGGTGGTGCGGCGGGCCAGGGTGATGCGGCGAATATTCTTAAG
CCCGCACTCGCACGAGGCGAGGTGCGGACCGTCGCGGCAACGACGTGGAGTGAATACAAGAAATATTTCGAGAAGGATGC
GGCGCTGACGCGTCGTTTCCAGCCAGTGCATGTGCGCGAGCCGGACGAGGCGACTGCGATACGGATGTTGCGCGGTGTGG
CGGATACTTTCGTCAGCCATCACAACGTTACCGTTCGTGATGAGGCGATCGTGGCTGCCGTGCAATTATCCGCGCGCTAC
ATGCCCGCTCGGCAATTGCCGGACAAGGCGGTCAGCCTGCTCGATACCGCCGCCGCGGCCGTTTCGCTGGCGCGGCAGAC
GTTGCCAGAGCGGTTACGTGCCATGGAAAGCGAGCGACACCTTCTGTCTGACGAACTGAACTGGCTTCTGCGTGAACCGC
AGGATGAGGACATGCAAAACCGCATCCAGTCGATACGCGACGAGCTTGAACGGCTTGAGGCCGGGATCGATGATCTGCGC
GGCCGTTATGACGCGGAAATGGCTGAACTGGCGGCGCTCAGTGAAGAGCAGCCGGCCGAAACCGGCGCGTCGAATGTTTC
GCACCTGCGGCCTGCCACGGAGATGCGGCCCGCAAATGCCGAAAGACTTGTTCCGACAGTGGTTGATCGTGAAGCGATCG
CCGCCGTCGTCTCGCGATGGACCGGGATTCCGCTCGGCAAACTTCTGGCGGACCAGATCGAAAGCGCCCGCACTCTGGAT
GTGCGCATGCGGCAGCGCGTGGTTGGGCAGGATGCCGCAATTACCCGGATTGCCGATGCCATGCGCACCGCCCGTGCCGG
ATTGTCCGATCCGCGCCGTCCGCCGGCGGTGTTTTTCCTTGTCGGCATGTCCGGAACGGGCAAGACCGAAACGGCGCTGT
CGCTGGCCGATCTTCTCTATGGCGGCAACAGCCATCTGACGACGATCAACATGTCGGAGTTCAAGGAGGAGCACAAGGTT
TCCCTGCTTCTCGGCTCACCGCCTGGCTATGTCGGTTTCGGCGAAGGTGGGGTGCTGACGGAAGCGGTGCGCCGCCGGCC
GTTCGGCGTTCTGCTTCTCGATGAAATCGACAAGGCTCACCCCGGCGTCCAGGATATTTTTTATCAGGTGTTCGACAAGG
GCGTGCTTCGCGATGGCGAAGGCCGCGACGTCGATTTCAAGAACACCACGATCTTCATGACGGCCAATACCGGTTCGGAA
TTGCTGTCGGCGCTTTCCGCCGATCCCGACACTATGCCGGAAGGTGAGGCGCTGGAAGCGCTTCTGATGCCGGAGCTTAC
CAAACAGTTCAAGCCCGCATTCCTCGGGCGCACGATCATCCTGCCCTTCATGCCGCTTGGCGCGGAGGAGCTTGCAAGTG
TCGTGGACATGCAGATTGGCAAGATCAGGGACCGTGTGCTCGCAACATATGGCACCGACCTGAGATTGTCCGATGCGGCG
CGCGATGCCTTGGTGGCGCGCGCCGGTGCAAGTGAAATCGGCGCACGCGCCATCGAAATCATGATCGGCAAGGATCTCCT
GCCGCCTCTTTCCAGCTTTTTCCTCGAGAAGGTCATCGCGGGAGAACGCGTCGGGAAGATCGTTGTCGATTTTGGTGAAA
ACGGGTTCGGCATTCGTGCGGAAGCGGCTGGGGAAGCAGATGAATTCGCCGTAACCGAAGAGGTTGGGGTGGATAAAGTT
GCCGCGTCGGATGGGGCTACCCGACGCATGCGGCATTAA

Protein sequence :
MSHIDLNRLVGALEPDLRVTLEAAASVAVRMGHRYVDIPHWLLAVVDAGIYAETFDELKIPLPVLKAEIGRSLEEAIIGD
GEALSLSQNILTAAREAWILASLEAGRDRVTLCDLLLAMDEETSLRSFVRSAFPSLKAMDRGALERLRSSAENGAGVDVP
SALTSSGEAGSAQAAGQNDFLRLYTHDMTTDARNGKVDPVIGRDDELRQLVDILTRRRQNNPILVGEAGVGKTAVAEALA
LEIASGNVPEKLRNVCLLNLDISLLQAGAGVKGEFERRLHGVIDAVKRSAEPVILFIDEAHGLVGAGGAAGQGDAANILK
PALARGEVRTVAATTWSEYKKYFEKDAALTRRFQPVHVREPDEATAIRMLRGVADTFVSHHNVTVRDEAIVAAVQLSARY
MPARQLPDKAVSLLDTAAAAVSLARQTLPERLRAMESERHLLSDELNWLLREPQDEDMQNRIQSIRDELERLEAGIDDLR
GRYDAEMAELAALSEEQPAETGASNVSHLRPATEMRPANAERLVPTVVDREAIAAVVSRWTGIPLGKLLADQIESARTLD
VRMRQRVVGQDAAITRIADAMRTARAGLSDPRRPPAVFFLVGMSGTGKTETALSLADLLYGGNSHLTTINMSEFKEEHKV
SLLLGSPPGYVGFGEGGVLTEAVRRRPFGVLLLDEIDKAHPGVQDIFYQVFDKGVLRDGEGRDVDFKNTTIFMTANTGSE
LLSALSADPDTMPEGEALEALLMPELTKQFKPAFLGRTIILPFMPLGAEELASVVDMQIGKIRDRVLATYGTDLRLSDAA
RDALVARAGASEIGARAIEIMIGKDLLPPLSSFFLEKVIAGERVGKIVVDFGENGFGIRAEAAGEADEFAVTEEVGVDKV
AASDGATRRMRH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 5e-137 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpB NP_356311.2 ATP-dependent Clp protease, ATP-binding subunit VFG2084 Protein 2e-119 45