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Name : secD (NMB0607) Accession : NP_273651.1 Strain : Neisseria meningitidis MC58 Genome accession: NC_003112 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 636746 - 638602 bp Length : 1857 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGATGAACCGTTATCCTTTATGGAAATATCTGCTGATTGTGTTCACGATTGCGGTTGCCGCAGTGTATTCGCTGCCCAA CCTATTCGGCGAAACACCCGCCGTGCAGGTATCGACCAACCGACAAGCCATCATCATCAACGAACAGACTCAATTCAAAG TGGATGCCGCGCTGAAAAACGCAGGTATTCAGACCGACGGGATGTTTGTTGTGGACAATTCACTGAAAGTGCGTTTCAAA GACACAGAAACGCAGCTTAAAGCGCGCGACGTCATCGAAAACACTTTGGGCGAAGGGTATATTACCGCGCTCAACCTGTT GGCGGACAGCCCCGAATGGATGGCGAAAATCAAAGCCAATCCGATGTTTTTGGGTTTGGACCTGCGCGGCGGCGTGCATT TCACCATGCAGGTCGATATGAAAGCGGCGATGCAGAAAACGTTTGAACGTTATTCGGGCGACATCCGCCGCGAACTGCGC CGCGAAAAAATCCGCAGCGGCACGGTGCGTCAGGCTGGAAACAGCCTGACCGTCCCTTTGCAGGATGCAGGTGATGTGCA AAAGGCTCTGCCGCAGTTGCGCAAGCTGTTTCCTGAAGCAACGCTGAATTCAGACGGCAGCAATATCGTCTTGACGCTTT CGGAAGAGGCGGTCAATAAAGTGTGTTCCGATGCGGTCAAACAGAACATCACTACCCTGCACAACCGTGTGAACGAGTTG GGCGTGGCCGAGCCCGTCATCCAGCAGTCCGGTGCAGACCGTATCGTCGTGCAGCTTCCGGGCGTTCAGGATACTGCCAA GGCAAAAGACATCATCGGCCGTACCGCGACTTTGGAATTGCGTATGGTGGAGGACGATCCTGCCAAGTTGCGCGAGGCAT TGGAAGGCAACGTGCCGAGCGGTTATGAGCTGCTTTCAAGCGGCGGAGATCGTCCCGAAATTCTGCTGATCAGCAAACAG GTCGAGCTGACGGGCGACAACATCAACGATGCGCAACCGAGTTTCGACCAAATGGGCGCACCTGCCGTCAGTCTGAGCTT GGACAGCGCGGGCGGCAGCATTTTCGGCGAACTGACTGCCGCAAATGTCGGCAAACGCATGGCGATGGTTTTGATCGACC AAGGAAAATCCGAGGTTGTAACCGCGCCGGTTATCCGTACTGCCATTACCGGCGGACGCGTGGAAATTTCCGGAAGCATG ACGACAGCCGAAGCCAATGATACGTCTTTGCTGTTGCGTGCCGGTTCTCTTGCCGCACCGATGCAGATTGTCGAAGAACG TACCATCGGTCCGTCTTTGGGTAAGGAGAACATCGAAAAAGGCTTCCATTCGACTTTATGGGGTTTTGCCATCGTTGCTG CATTCATGGTGGTTTACTATCGTCTGATGGGTTTCTTTTCTACCATTGCATTGAGTGCCAACATACTGTTCCTAATCGGT ATTTTGTCTGCCATGCAGGCAACGTTGACGTTACCGGGTATGGCCGCGCTGGCGTTGACTTTGGGTATGGCAATCGACTC CAACGTCTTGATTAACGAACGTATCCGCGAAGAATTGCGTGCCGGCGTGCCGCCGCAGCAGGCAATCAATCTCGGTTTCC AACACGCATGGGCGACCATTGTCGATTCGAACCTGACTTCGCTGATTGCCGGTATCGCGCTTTTGGTATTCGGTTCCGGC CCGGTACGCGGTTTTGCGGTCGTACACTGTTTGGGTATTCTGACTTCGATGTATTCATCCGTCGTCGTATTCCGTGCGTT GGTCAATCTGTGGTACGGACGCAGACGCAAATTGCAGAATATTTCCATTGGTTCGGTGTGGAAGCCGAAAGCCGAAATGG CAGGAGGCAAGGAGTAA Protein sequence : MMNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALKNAGIQTDGMFVVDNSLKVRFK DTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELR REKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVCSDAVKQNITTLHNRVNEL GVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQ VELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSM TTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIG ILSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSG PVRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGSVWKPKAEMAGGKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-94 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-94 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-94 | 41 |
