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Name : secD (NMA0812) Accession : YP_002342255.1 Strain : Neisseria meningitidis Z2491 Genome accession: NC_003116 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 793120 - 794976 bp Length : 1857 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGATGAACCGTTATCCTTTATGGAAATATCTGCTGATTGTGTTCACGATTGCGGTTGCCGCAGTGTATTCGCTGCCCAA CCTATTCGGCGAAACACCCGCCGTGCAGGTATCGACCAACCGACAAGCCATCATCATCAACGAACAGACTCAATTCAAAG TGGATGCCGCGCTGCAAAACGCGGGTATTCAGACCGACGGGATGTTTGTTGTGGACAATTCACTGAAAGTGCGTTTCAAA GACACCGAAACGCAGCTTAAAGCGCGCGACGTCATCGAAAACACTTTGGGCGAAGGGTATATTACCGCGCTCAACCTGTT GGCGGACAGCCCCGAATGGATGGCGAAAATCAAAGCCAATCCGATGTTTTTGGGTTTGGACTTGCGCGGCGGCGTGCATT TCACCATGCAGGTCGATATGAAAGCGGCGATGCAGAAAACGTTTGAACGTTATTCGGGCGACATCCGCCGCGAACTGCGC CGCGAAAAAATCCGCAGCGGCACGGTGCGTCAGGCTGGAAACAGCCTGACCGTCCCTTTGCAGGATGCAGGTGATGTGCA AAAGGCTCTGCCGCAGTTGCGCAAGCTGTTTCCTGAAGCAACGCTGAATTCAGACGGCAGCAATATCGTCTTGACGCTTT CGGAAGAGGCGGTCAATAAAGTGCGTTCCGATGCGGTCAAACAGAACATCACTACCCTGCACAACCGTGTGAACGAGTTG GGCGTGGCCGAACCCGTCATCCAGCAGTCCGGTGCCGACCGTATCGTCGTGCAGCTTCCGGGCGTTCAGGATACTGCCAA GGCAAAAGACATCATCGGCCGTACCGCGACTTTGGAATTGCGTATGGTGGAGGACGATCCTGCCAAGTTGCGCGAGGCAT TGGAAGGCAACGTGCCGAGCGGTTATGAGCTGCTTTCAAGCGGCGGAGATCGTCCCGAAACTCTGCTAATCAGCAAACAG GTCGAGCTGACGGGCGACAACATCAACGATGCGCAACCGAGTTTCGACCAAATGGGCGCACCTGCCGTCAGTCTGAGCTT GGACAGCGCGGGTGGCAGCATTTTTGGCGAACTGACTGCCGCAAATGTCGGCAAACGCATGGCGATGGTTTTGATCGACC AAGGAAAATCCGAGGTTGTAACCGCGCCGGTTATCCGTACTGCCATTACCGGCGGACGCGTGGAAATTTCCGGAAGCATG ACGACAGCCGAAGCCAATGATACGTCTTTGCTGTTGCGTGCCGGTTCTCTTGCCGCGCCGATGCAGATTGTCGAAGAACG TACCATCGGTCCGTCTTTGGGTAAGGAGAACATCGAAAAAGGCTTCCATTCGACTTTATGGGGTTTTGCCATCGTTGCTG CATTCATGGTGGTTTACTATCGTCTGATGGGTTTCTTTTCTACCATTGCATTGAGTGCCAACATACTGTTCCTAATCGGT ATTTTGTCTGCCATGCAGGCAACGTTGACGTTACCGGGTATGGCCGCGCTGGCGTTGACTTTGGGTATGGCAATCGACTC CAACGTCTTGATTAACGAACGTATCCGCGAAGAATTGCGTGCCGGCGTGCCGCCGCAGCAGGCAATCAATCTCGGTTTCC AACACGCATGGGCGACCATTGTCGATTCCAACCTGACTTCGCTGATTGCCGGTATCGCGCTTTTGGTATTCGGTTCCGGC CCGGTACGCGGTTTTGCGGTCGTACACTGTTTGGGTATTCTGACTTCGATGTATTCGTCCGTCGTCGTATTCCGTGCGTT GGTCAATCTGTGGTACGGACGCAGACGCAAATTGCAGAATATTTCCATTGGTTCGGTGTGGAAGCCGAAAGCCGAAATGG CAGGAGGCAAGGAGTAA Protein sequence : MMNRYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIINEQTQFKVDAALQNAGIQTDGMFVVDNSLKVRFK DTETQLKARDVIENTLGEGYITALNLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELR REKIRSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEATLNSDGSNIVLTLSEEAVNKVRSDAVKQNITTLHNRVNEL GVAEPVIQQSGADRIVVQLPGVQDTAKAKDIIGRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQ VELTGDNINDAQPSFDQMGAPAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITGGRVEISGSM TTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVAAFMVVYYRLMGFFSTIALSANILFLIG ILSAMQATLTLPGMAALALTLGMAIDSNVLINERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSG PVRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRRKLQNISIGSVWKPKAEMAGGKE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-95 | 41 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-95 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-95 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-95 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-95 | 41 |
