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Name : secD (STM0407) Accession : NP_459402.1 Strain : Salmonella enterica LT2 Genome accession: NC_003197 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 462331 - 464178 bp Length : 1848 bp Strand : + Note : 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side o DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTACATCATGCTGGTCGTCGTGATTATCGTCGGCCTGCTTTACGCACTTCCCAA CCTGTATGGTGAGGATCCGGCTGTTCAAATCACTGGCGTGCGCGGCGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCC AGAAAACGTTACAAGAAGAAAAAATTCCCGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACACC ACCGATACCCAGCTACGCGCCCGTGAAGCGCTGATGAGCGTGCTGGGGGATAAATATGTCGTGGCGCTTAACCTTGCGCC GGCTACGCCGCGCTGGTTGGCGGCTATTCACGCCGATCCGATGAAGCTCGGTCTTGATCTGCGCGGCGGCGTTCACTTCC TGATGGAAGTGGATATAGATACCGCGTTAGGTAAACTCCAGGAACAAAATATCGATAGCCTGCGCAGCGATCTGCGTGAA AAAGGCATTCCTTATACCACCGTTCGTAAAGAAAATAATTATGGGTTGAGCATCACGTTCCGTGACAGCAAAGCGCGTGA TGAGGCGATCGCCTATCTGACGCCGCGTCATCGTGACCTGGTGATTTCCAGCCAGAGCGGTAATCAACTTCGCGCGGTAA TGACCGATGCGCGCCTGAGCGAAGCGCGTGAATACGCCGTTCAGCAGAACATTAATATTCTGCGTAACCGTGTTAACCAA CTGGGCGTCGCGGAGCCTGTCGTACAACGCCAGGGCGCAGACCGTATTGTGGTTGAGCTGCCGGGTATCCAGGATACCGC TCGCGCGAAAGAAATTCTCGGCGCGACCGCGACGCTGGAATTCCGTCTGGTGAATACCAACGTTGACCAGGCCGCCGCTG CTGCCGGGCGCGTACCGGGTGATTCCGAAGTGAAACAGACCCGCGAAGGTCAGCCGGTGGTATTGTACAAACGCGTGATC CTCACCGGCGACCATATCACCGACTCGACGTCCAGCCAGGATGAATATAACCAACCGCAGGTTAACATCTCGCTGGATAG CGCAGGCGGCAATATCATGTCTAACTTCACTAAGGACAATATCGGCAAACCGATGGCGACCCTGTTTGTGGAGTATAAAG ACAGCGGTAAGAAAGACGCTAACGGTCGCGCCGTACTGGTGAAACAGGAAGAAGTGATTAACATTGCCAACATCCAGTCC CGGCTGGGTAACAGCTTCCGTATTACCGGTATCAGCAACCCGAACGAAGCGCGTCAGCTCTCGTTGTTGCTGCGTGCGGG CGCCCTGATTGCGCCGATTCAGATCGTTGAAGAGCGCACCATTGGCCCGACTCTGGGTATGCAGAACATCAAGCAGGGCC TGGAAGCCTGTCTGGCCGGTCTGGTGGTCTCCATCCTGTTCATGATCTTCTTCTATAAGAAGTTTGGTCTGATTGCGACC AGCGCGTTAGTGGCTAACCTAGTGTTGATTGTCGGTATCATGTCGCTGTTGCCGGGGGCAACGCTCAGTATGCCGGGGAT TGCGGGTATCGTGTTAACCCTTGCGGTGGCGGTCGACGCCAACGTTCTGATTAACGAACGTATCAAAGAAGAGTTGAGTA ATGGCCGCACGGTACAGCAGGCGATAAACGAAGGCTATGCCGGCGCGTTCAGTTCCATCTTCGATGCGAACATCACGACG CTGATTAAAGTCATCATTCTGTATGCTGTCGGTACCGGGGCAATTAAAGGGTTCGCGATTACGACCGGTATCGGTGTGGC GACGTCGATGTTTACCGCGATTATCGGTACGCGTGCTATCGTAAACCTGCTATATGGCGGCAAGCGCGTCACTAAGCTGT CAATCTGA Protein sequence : MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDT TDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVI LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITT LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-119 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-119 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-119 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-119 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-119 | 48 |
