Gene Information

Name : ssaQ
Accession : NP_456110.1
Strain : Salmonella enterica CT18
Genome accession: NC_003198
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 1628054 - 1629022 bp
Length : 969 bp
Strand : -
Note : Similar to Salmonella typhimurium secretion system apparatus protein SsaQ SW:SSAQ_SALTY (P74860) (322 aa) fasta scores: E(): 0, 98.8% id in 322 aa, and to Caulobacter crescentus flagellar motor switch protein FliN fliN SW:FLIN_CAUCR (Q03593) (110 aa) fast

DNA sequence : 
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGGTGGAGATACTTCCAACACAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGCTAATTGGCACCGCTAATCGATCGGCTATTGAGCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGCTGGCGCCGTTATTGCAAGCCAGTGATGCAACCCTCTGTCAGAACGAGCCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGTCAACAGATTTATCCTGCTCCTCCTGTGGTA
GTCCCTGTATATTTAGGCTGGTGTCAGCTTACATTAATTGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTTGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGTATTTACGCGAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGACGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGCCCGATGTTAAAGAGTGAT
GGAACGTCTTCAGTCGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGATTGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGCGGATGTTTTGCGCCAGAAGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGGAATGAATTCATGGTACGTATTACACGTTGGTATCTTTGTAAAAAT
ACAGCGTAA

Protein sequence : 
MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIEPELLY
GIAEWGLAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMLKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaQ NP_456110.1 putative type III secretion protein Virulence SPI-2 Protein 2e-143 100
ssaQ NP_805089.1 type III secretion system protein Virulence SPI-2 Protein 2e-143 100
ssaQ CAA70540.1 secretion system apparatus Virulence SPI-2 Protein 5e-98 99
ssaQ NP_460383.1 type III secretion system protein Virulence SPI-2 Protein 3e-142 99
ssaQ YP_216426.1 type III secretion system protein Virulence SPI-2 Protein 6e-143 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ssaQ NP_456110.1 putative type III secretion protein VFG0518 Protein 1e-142 99