|
Name : STY3732 Accession : NP_457917.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta-subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 3581277 - 3585305 bp Length : 4029 bp Strand : - Note : Orthologue of E. coli rpoB (RPOB_ECOLI); Fasta hit to RPOB_ECOLI (1342 aa), 99% identity in 1342 aa overlap DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCACAAGTTCTGGATGTACCTTATCT CCTTTCTATCCAGCTTGACTCGTTTCAGAAGTTTATCGAGCAAGATCCTGAAGGGCAGTACGGCCTGGAAGCAGCCTTCC GTTCCGTGTTCCCGATTCAGAGCTACAGCGGTAATTCCGAGCTGCAGTACGTCAGCTACCGCCTTGGCGAACCGGTGTTT GACGTTCAGGAATGTCAGATCCGTGGCGTGACCTATTCCGCACCGCTGCGCGTAAAACTGCGTCTGGTGATCTACGAGCG CGAAGCGCCGGAAGGCACCGTTAAAGACATTAAAGAACAAGAAGTCTACATGGGCGAAATTCCGCTCATGACCGACAACG GTACCTTTGTTATCAACGGTACTGAGCGTGTTATCGTTTCTCAGCTGCACCGTAGTCCGGGCGTCTTCTTTGACTCCGAC AAAGGTAAAACTCACTCTTCGGGTAAAGTGCTGTATAACGCGCGCATCATTCCTTACCGTGGTTCCTGGCTGGACTTCGA ATTCGATCCGAAGGACAACCTGTTCGTGCGTATCGACCGTCGCCGTAAACTGCCTGCGACCATCATCCTGCGTGCGCTGA ACTACACCACTGAGCAGATCCTTGACCTGTTCTTTGAGAAAGTCGTCTTCGAAATTCGCGACAACAAGCTGCAGATGGAG CTGATTCCAGAACGTCTGCGCGGCGAAACCGCGTCGTTCGATATCGAAGCTAACGGCAAGGTGTACGTTGAAAAAGGCCG TCGCATTACCGCGCGTCATATCCGTCAGCTGGAAAAAGACGATATCAAGCATATCGAAGTTCCGGTTGAGTACATCGCAG GTAAAGTCGTCTCTAAAGACTACGTTGACGAATCTACTGGCGAGCTGATCTGCGCGGCGAACATGGAGCTGAGCCTGGAT CTGCTGGCTAAGCTGAGCCAGTCCGGCCACAAGCGTATCGAAACGCTGTTTACCAACGATCTGGACCACGGCCCGTACAT TTCTGAAACGGTACGCGTCGATCCAACTAACGATCGTCTGAGCGCGCTGGTAGAAATCTACCGCATGATGCGCCCTGGTG AGCCGCCGACACGCGAAGCGGCTGAAAGCCTGTTTGAGAACCTGTTCTTCTCCGAAGACCGCTATGACCTGTCTGCGGTG GGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGACGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGA TGTCATGAAGAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTGGATGATATCGACCACCTCGGCAACCGTCGTATCC GTTCCGTCGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTGCGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCT CTGGGCGATCTGGATACCCTGATGCCTCAGGATATGATCAACGCCAAGCCGATTTCCGCCGCAGTGAAAGAGTTCTTTGG TTCCAGCCAGCTGTCTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCG GCCCAGGCGGTCTGACCCGCGAACGCGCAGGCTTCGAAGTTCGAGACGTACACCCGACGCACTACGGTCGCGTATGTCCT ATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCCCTGTCCGTGTACGCACAGACTAACGAATATGGCTTCCT TGAGACGCCGTACCGTCGTGTGGTTGATGGCGTGGTTACTGACGAAATTCATTACCTGTCTGCTATCGAAGAAGGCAACT ACGTTATCGCTCAGGCGAACTCCAACCTGGATGACGAAGGCCACTTTGTAGAAGATCTGGTAACCTGCCGTAGCAAAGGC GAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTCTCCGTCGGTGCGTCCCT GATCCCGTTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCGGTTCCGACTCTGC GTGCTGATAAGCCGCTGGTGGGTACCGGTATGGAACGTGCTGTCGCCGTCGACTCCGGTGTTACTGCAGTAGCTAAACGT GGCGGTACTGTTCAGTACGTGGATGCATCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTACCCGGGTGAAGCAGG TATCGACATCTATAACCTGACCAAATACACCCGCTCTAACCAGAACACCTGTATCAACCAGATGCCATGTGTGTCTCTGG GCGAGCCGGTTGAACGCGGCGACGTGCTGGCAGACGGTCCGTCCACCGACCTCGGTGAACTGGCGCTCGGTCAGAACATG CGCGTGGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATCCTCGTTTCCGAGCGTGTTGTCCAGGAAGACCG TTTCACCACCATCCACATTCAGGAACTGGCGTGCGTGTCCCGTGACACCAAGCTGGGGCCGGAAGAGATCACCGCTGACA TCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATCGGCGCGGAAGTGACTGGCGGC GACATTCTGGTCGGTAAGGTAACGCCGAAAGGTGAAACCCAGCTGACGCCGGAAGAGAAACTGCTGCGTGCGATCTTCGG TGAGAAAGCGTCTGACGTTAAAGACTCTTTTCTGCGCGTACCTAACGGTGTCTCCGGTACGGTTATCGACGTTCAGGTCT TTACTCGCGATGGCGTAGAAAAAGACAAACGTGCTCTGGAAATCGAAGAGATGCAGCTCAAGCAGGCGAAAAAAGACCTG TCTGAAGAACTGCAGATCCTCGAAGCGGGCCTGTTTAGCCGTATCCGTGCGGTGTTGGTGTCCGGCGGCGTTGAAGCTGA GAAGCTCGACAAACTGCCGCGCGACCGCTGGCTGGAACTCGGTCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAAC TGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAAAAACTTGAAGCGAAGCGCCGTAAAATCACCCAGGGCGAC GATCTGGCGCCGGGCGTGCTGAAGATCGTGAAGGTCTATCTGGCCGTTAAACGCCGTATCCAGCCGGGTGATAAGATGGC AGGTCGTCACGGTAACAAGGGTGTTATCTCTAAGATCAACCCGATCGAAGACATGCCTTACGATGAAAACGGCACGCCGG TAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATTCTGGAAACCCACCTGGGTATGGCT GCGAAAGGTATTGGCGACAAGATTAACGCCATGCTGAAACAGCAGCAGGAAGTCGCGAAACTGCGCGAATTCATCCAGCG TGCCTACGATCTGGGCGCCGACGTTCGTCAGAAAGTCGACCTGAGCACCTTCAGCGATGATGAAGTGCTGCGTCTGGCAG AAAACCTGCGCAAAGGTATGCCGATTGCCACACCAGTGTTCGACGGTGCGAAAGAAGCGGAAATCAAAGAGCTGCTGAAA CTGGGCGACCTGCCGACCTCCGGTCAGATCACCTTGTTCGATGGCCGTACGGGTGAACAGTTCGAACGTCCGGTAACCGT CGGTTACATGTACATGCTGAAACTGAACCACCTGGTTGATGACAAGATGCATGCGCGTTCTACCGGTTCTTACAGCCTGG TTACTCAGCAGCCGCTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGCTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCT TACGGCGCCGCCTACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACCAAGATGTATAAGAA CATCGTGGACGGCAACCATCAGATGGAACCGGGTATGCCGGAATCCTTCAACGTTCTGTTGAAAGAGATCCGCTCGCTGG GCATCAACATCGAACTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKDYVDESTGELICAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSFLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIRAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | CP001918.1.gene250.p | Protein | 0.0 | 99 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | CP000034.1.gene3741. | Protein | 0.0 | 99 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | CP001138.1.gene4362. | Protein | 0.0 | 99 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_002695.1.914942.p | Protein | 0.0 | 99 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | CP000647.1.gene4402. | Protein | 0.0 | 99 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | CP004022.1.gene2794. | Protein | 0.0 | 94 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| STY3732 | NP_457917.1 | DNA-directed RNA polymerase, beta-subunit | NC_011035.1.6448762. | Protein | 0.0 | 64 |
