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Name : STY0445 Accession : NP_455002.1 Strain : Salmonella enterica CT18 Genome accession: NC_003198 Putative virulence/resistance : Unknown Product : protein-export membrane protein SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 454536 - 456383 bp Length : 1848 bp Strand : + Note : Orthologue of E. coli secD (SECD_ECOLI); Fasta hit to SECD_ECOLI (615 aa), 95% identity in 615 aa overlap DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTACATCATGCTGGTCGTCGTGATTATCGTCGGCCTGCTTTACGCACTTCCCAA CCTGTATGGTGAGGATCCGGCTGTTCAAATCACTGGCGTGCGCGGCGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCC AGAAAACGTTACAAGAAGAAAAAATTCCCGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACACC ACCGATACCCAGCTACGCGCCCGTGAAGCGCTGATGAGCGTGCTGGGGGATAAATATGTCGTGGCGCTTAACCTTGCGCC GGCTACGCCGCGCTGGTTGGCGGCTATTCACGCCGATCCGATGAAGCTCGGTCTTGATCTGCGCGGCGGCGTTCACTTCC TGATGGAAGTGGATATGGATACCGCGTTAGGTAAACTCCAGGAACAAAATATCGATAGCCTGCGCAGCGATCTGCGTGAA AAAGGCATTCCTTATACCACCGTTCGTAAAGAAAATAATTATGGGCTGAGCATCACGTTCCGTGACAGCAAAGCGCGTGA TGAGGCGATCGCCTATCTGACGCCGCGTCATCGTGACCTGGTGATTTCCAGCCAGAGCGGCAATCAACTTCGCGCGGTAA TGACCGATGCGCGCCTGAGCGAAGCGCGTGAATACGCCGTTCAGCAGAACATTAATATTCTGCGTAACCGTGTTAACCAA CTGGGCGTCGCGGAGCCTGTCGTACAACGCCAGGGCGCAGACCGTATTGTGGTTGAGCTGCCGGGTATCCAGGATACCGC TCGCGCGAAAGAAATTCTCGGCGCGACCGCGACGCTGGAATTCCGTCTGGTGAATACCAACGTTGACCAGGCCGCCGCTG CTGCCGGGCGCGTACCGGGCGATTCCGAAGTGAAACAGACCCGCGAAGGTCAGCCGGTGGTATTGTACAAACGCGTGATC CTCACCGGCGACCATATCACCGACTCGACGTCCAGCCAGGATGAATATAACCAACCGCAGGTTAACATCTCGCTGGATAG CGCAGGCGGCAATATCATGTCTAACTTCACTAAGGACAATATCGGCAAACCGATGGCGACCCTGTTTGTGGAGTATAAAG ACAGCGGTAAGAAAGACGCTAACGGTCGCGCCGTACTGGTGAAACAGGAAGAGGTGATTAACATTGCCAACATCCAGTCT CGGCTGGGTAACAGCTTCCGTATTACCGGTATCAGCAACCCGAACGAAGCGCGTCAGCTCTCGTTGTTGCTGCGTGCGGG TGCCCTGATTGCGCCGATTCAGATCGTTGAAGAGCGCACCATTGGCCCGACTCTGGGTATGCAGAACATCAAGCAGGGCC TGGAAGCCTGTCTGGCCGGTCTGGTGGTCTCCATCCTGTTCATGATCTTCTTCTATAAGAAGTTTGGTCTGATTGCGACC AGCGCGTTAGTGGCTAACCTGGTGTTGATTGTCGGTATCATGTCGCTGTTGCCGGGGGCAACGCTCAGTATGCCGGGGAT TGCGGGTATCGTGTTAACCCTTGCGGTGGCGGTCGACGCCAACGTTCTGATTAACGAACGTATCAAAGAAGAGTTGAGTA ATGGCCGCACGGTACAGCAGGCGATAAACGAAGGCTATGCCGGCGCGTTCAGTTCCATCTTCGATGCGAACATCACGACG CTGATTAAAGTCATCATTCTGTATGCTGTCGGTACCGGGGCAATTAAAGGGTTCGCGATTACGACCGGTATCGGTGTGGC GACGTCGATGTTTACCGCGATTATCGGTACGCGTGCTATCGTAAACCTGCTATATGGCGGCAAGCGCGTCACTAAGCTGT CAATCTGA Protein sequence : MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDT TDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVI LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITT LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-120 | 49 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-120 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-120 | 49 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-120 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-120 | 48 |
