Gene Information

Name : lin1115 (lin1115)
Accession : NP_470452.1
Strain : Listeria innocua Clip11262
Genome accession: NC_003212
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1133956 - 1134243 bp
Length : 288 bp
Strand : +
Note : similar to Salmonella typhimurium PduA protein

DNA sequence : 
ATGCAAGAAGCACTAGGTTTAGTTGAAACTAAAGGGCTAGTCAGCGCCATTGAAGCCGCTGACGCCATGGTTAAATCAGC
TAACGTAACATTAACAGGGTACGAAAAAATCGGATCCGGGCTTGTTACTGTGATGGTTAGAGGGGATGTAGGTGCAGTTA
AAGCAGCAACAGACGCTGGGGCTGAAGCAGCAAGAAATGTAGGTACCGTAATGAGTACACATGTTATTCCTCGTCCGCAT
ACTGATGTGGAAGAAATTTTACCAGTGAGGGTGAAGTCAGATGAGTAA

Protein sequence : 
MQEALGLVETKGLVSAIEAADAMVKSANVTLTGYEKIGSGLVTVMVRGDVGAVKAATDAGAEAARNVGTVMSTHVIPRPH
TDVEEILPVRVKSDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 4e-25 69
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 7e-24 66
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 8e-24 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lin1115 NP_470452.1 hypothetical protein VFG1596 Protein 2e-25 69
lin1115 NP_470452.1 hypothetical protein VFG1598 Protein 3e-24 66
lin1115 NP_470452.1 hypothetical protein VFG1597 Protein 3e-24 64