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Name : glcD (RSc2666) Accession : NP_520787.1 Strain : Ralstonia solanacearum GMI1000 Genome accession: NC_003295 Putative virulence/resistance : Unknown Product : glycolate oxidase FAD-linked subunit oxidoreductase Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : 1.1.3.15 Position : 2875731 - 2877224 bp Length : 1494 bp Strand : + Note : Product confidence : probable; Gene name confidence : probable; predicted by Codon_usage; predicted by Homology; predicted by FrameD DNA sequence : ATGAACGCGCCGCTGCCCGCCGCCGCCCGCGATCCGTCTGCCGTGCAGGCCGAGCTGATCGCCGCGCTGTCGCCCCTGAT GCCCGCCGATGCCCTGCTGTGGGAGCGCGAAGACACCACCCCCTACGAATGCGACGGTCTCGCCGCCTACCGGCAGGTGC CGCTGGCCGTGGCGCTGCCGGACAGCGAAGCGCAGGTCGTGGAGATCCTGCGCGCCTGCCACCGCCTGGGCGTGCCGGTG GTGCCGCGCGGCGCCGGCACCAGCCTGTCGGGCGGCGCGATGCCGACGCCGGGCGGACTGGTGCTGTCGCTGGCCAAGTT CAAGCGCATCCTGAAGCTCGACCCGCACACCCGCACCGCGGCCGTGCAGCCGGGCGTGCGCAACCTGGCCATCTCGGAGG CCGCCGCGCCGCACGGGCTGTACTACGCGCCCGATCCGTCGTCGCAGATCGCCTGCACCATCGGCGGCAACGTCAGCGAG AACTCCGGCGGCGTGCATTGCCTGAAGTACGGCCTGACCGTGCACAACGTGCTGCGCGTGCGCGCCGTGATGATGGACGG CGAGGTGGTCGAGTTCGGCAGCGAGGCACCCGACGCGCCCGGCCTGGACCTGCTCGCCGCCGTGATCGGCTCCGAAGGCA TGCTGGCCGTGGTGACGGAGGTGACCGTGCGGCTGGTGCCCAAGCCGCAGCTGGCGCAGGTCATCATGGCGAGCTTCGAT GACGTGGAAGCGGGCGGCAATGCGGTGGCCGAGGTGATCGCCGCCGGCATCATCCCGGCCGGGCTGGAGATGATGGACAA GCCCGCCACCGCCGCCGTCGAGGAATTCGTTCGCGCCGGCTACGACCTGGACGCCGCGGCCATCCTGCTGTGCGAATCCG ACGGCACGCCCGAAGAGGTGGCCGAAGAGATCGCACGGATGAGCGAGGTGCTGCGCGCCTCCGGCGCCACCCGCATCCAG GTGTCGCAGAGCGAGGCCGAGCGGCTGAAATTCTGGAGCGGCCGCAAGAATGCCTTCCCGGCCGCCGGGCGCATCTCGCC GGACTACTACTGCATGGACGGCACCATCCCGCGCAAGCACATCGGCACGCTGCTCAAGCGCATCCAGCAGATGGAGCAAA ACTACGCGCTGCGCTGCATCAACGTCTTCCACGCCGGCGACGGCAACATGCACCCGCTGATCCTCTTCAACGGCGAAGAC CAGGATGAATGGCACCGCGCCGAGCTGTTCGGCGCGGACATCCTCGAGACCTGCGTGGAGCTGGGCGGCACCGTCACCGG CGAGCATGGCGTGGGGGTCGAGAAGCTCAATTCGATGTGCGTGCAGTTCTCGGCCGAGGAGCGCGATGCCTTCCTGCGCG TCAAGGCCGCCTTCGATCCGGCGCGCCTGCTGAACCCAGACAAGGCCATCCCCACGCTCGCGCGCTGCGCCGAATACGGC AAGCTGCACGTGCGCAACGGCCTGCTGCCGCACCCCGACCTGCCGCGCTTCTGA Protein sequence : MNAPLPAAARDPSAVQAELIAALSPLMPADALLWEREDTTPYECDGLAAYRQVPLAVALPDSEAQVVEILRACHRLGVPV VPRGAGTSLSGGAMPTPGGLVLSLAKFKRILKLDPHTRTAAVQPGVRNLAISEAAAPHGLYYAPDPSSQIACTIGGNVSE NSGGVHCLKYGLTVHNVLRVRAVMMDGEVVEFGSEAPDAPGLDLLAAVIGSEGMLAVVTEVTVRLVPKPQLAQVIMASFD DVEAGGNAVAEVIAAGIIPAGLEMMDKPATAAVEEFVRAGYDLDAAAILLCESDGTPEEVAEEIARMSEVLRASGATRIQ VSQSEAERLKFWSGRKNAFPAAGRISPDYYCMDGTIPRKHIGTLLKRIQQMEQNYALRCINVFHAGDGNMHPLILFNGED QDEWHRAELFGADILETCVELGGTVTGEHGVGVEKLNSMCVQFSAEERDAFLRVKAAFDPARLLNPDKAIPTLARCAEYG KLHVRNGLLPHPDLPRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 2e-136 | 59 |
