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Name : secD (RSc2715) Accession : NP_520836.1 Strain : Ralstonia solanacearum GMI1000 Genome accession: NC_003295 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2920598 - 2922478 bp Length : 1881 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTATCCGCTCTGGAAATACCTTGTGATCCTGGTGGCGCTCGCCATCGGGTTCCTCTATACGCTGCCGAACTT CTTCGGTGAAGCGCCCGCCGTCCAGGTGTCGTCGGGCAAGGCCACCGTCAGGGTCGACCTGGCGACGCAAAAGCAGGTCG AAGACCTCCTCGCCGCCGCCAACCTGAAGCCGAACGGCGTGTTCTTCGACATGAACGGCACCTCGGGCAGCGTGCGCGTG CGCTTTGCCGACACCGACACGCAGCTCAAGGCCAAGGATGCGCTGGCGCGCGGCCTGAACAGCGACCCGAACGACCCGAC CTACATCGTCGCGCTGAACCTGCTGTCGGGTTCGCCGCGCTGGCTGACCGCCATCCATGCCCTGCCGATGTTCCTGGGCC TGGACCTGCGCGGCGGCGTGCACTTCCTGCTGCAGGTCGACATGAACGGCGCGCTGACCAAGAAGCTCGACTCGCTGGCC GGCGATATCCGTACCCAGCTGCGCGACAAGGGCGTGCGCCACAGCGGCATCGAGCGCAGCGGCACGACCATCAGCATCAA GTTCACCAACCCCGACGAAGCCGACCGCGCCCGCGGCCTGCTGGCCGACAGCGCCCGCGAGCTGGCCTTCACGGTCGACA AGACCGCCGACGGCGCCACGCTCACCGGTACCTTCACCGCCGCGGCAATGAAGGAAGTCCAGGACAACGCCGTCAAGCAG AACGTCGTCACGCTGCACAACCGCGTCAACGAGCTCGGCGTGTCCGAGCCGGTGATCCAGCAGCAGGGCCCGGACCGCAT CGTGGTGCAGTTGCCCGGCGTGCAGGACACCGCCAAGGCCAAGGACATCATCGGCCGCACCGCCACGCTGGAAGCCCGCC TGGCCGACCCGAACGCCACCGGCATTCCGCGTGCGACCGATCCGGTGCCGCTGGGTGACGAGCTGTTCACGCAAGGCCGC GGCGCGCCGGTGCTGCTGCAGAAGCAGGTGATCTTCACCGGCGACCGCATCAACAGCGCCTCGGCCGGCTTCGACCAGAA CCACAACCCCTCGGTCGACATCACGCTCGACGGCCAGGGCGGCCGCATGCTGCGCGACGTCTCGCGCGACAACATCGGCA AGCGCATGGGCATCGTGCTGTTCGAGAAGGGCAAGGGCGAGGTGCTGACCGTCGCCACCATCCAGTCCGAACTGGGCTCG CGCTTCCAGATCACCGGCATCGGCTCGGTGGAATCGGCCTCCGACCTGGCGCTGCTGCTGCGCGCGGGCTCCCTGGCCGC GCCGATGGAGATCATCGAAGAGCGCACCATCGGCCCGTCGCTGGGCGCCGACAACATCAAGAAGGGCTTCAATTCGGCCG CGTACGGCTTCGCCGCCATCTCGGTGTTCATGGTGCTGTACTACATGCTGTTCGGCGCGTTCTCGGTGGTGGCGCTGGGC GTGAACGTGTTCCTGCTGATCGCCATCCTGTCGATGCTGCAGGCCACCCTCACCCTGCCCGGCATCGCGGCCATCGCGCT GGCGCTGGGCATGGCGATCGACGCCAACGTGCTGATCAACGAGCGCGTCCGCGAAGAGCTGCGCAACGGCGCGTCGCCGC AGATGGCGATCGCCGCCGGCTTCGAGCGCGCCTGGGCGACCATCCTGGACTCGAACGTGACCACGCTGATCGCCGGCCTG GCGCTGCTGGCCTTCGGCTCGGGCCCGGTGCGCGGCTTCGCCGTGGTGCACTGCCTGGGCATCCTGACGTCGATGTTCTC GGCGGTGTTCTTCAACCGCAGCCTGGTCAACCTCTGGTACGGCCGCAAGAAGAAGCTGCAGAGCCTCGCCATCGGCCAGG TGTGGAAACCCGCCGGCACCGAAAGTCCGGCCAAGCAGTAA Protein sequence : MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVRVDLATQKQVEDLLAAANLKPNGVFFDMNGTSGSVRV RFADTDTQLKAKDALARGLNSDPNDPTYIVALNLLSGSPRWLTAIHALPMFLGLDLRGGVHFLLQVDMNGALTKKLDSLA GDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSARELAFTVDKTADGATLTGTFTAAAMKEVQDNAVKQ NVVTLHNRVNELGVSEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGR GAPVLLQKQVIFTGDRINSASAGFDQNHNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSELGS RFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYYMLFGAFSVVALG VNVFLLIAILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGL ALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKKLQSLAIGQVWKPAGTESPAKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-98 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-97 | 43 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-97 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-97 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-97 | 43 |
