Gene Information

Name : pduL (CPE0905)
Accession : NP_561821.1
Strain : Clostridium perfringens 13
Genome accession: NC_003366
Putative virulence/resistance : Virulence
Product : propanediol utilization protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4869
EC number : -
Position : 1106875 - 1107510 bp
Length : 636 bp
Strand : +
Note : similar to prf:2520232M pduL gene from Salmonella enterica (210 aa); 53.5% identity in 198 aa overlap

DNA sequence :

ATGGACAATCTATTACAGGACATTATAGAGGAAGTAGTCAGAAGAGTTAAGGATGAAGCTTTTATAGAAGTTGAAGCTTC
AGGTAGACATGTTCATTTAACTAGGGAGCATATAGACATATTATTTGGAGAAGGACATGAGCTTACTAGAATAAAAGATT
TATCTCAACCAGGTCAGTATGCTTGTAAAGAAAGAGTTACTATATCAGGGCCTAGAGGTAAGATAGATAATGTTGTGGTT
TTAGGACCACCCAGAAATGAAACTCAAGTGGAAGTTTCATTTACAGATGCTCTAGTACTAGGATCTATACCTCCAGTTAA
ATTAAGTGGAGATTTAGAGAATACTCCAGAAATAACAATTTCAACAGAGAGAGCTTCTATAGCCTTAAATAGAGGATTAA
TGGTTGCTAAAAGACATATACACATGACACCAGAGGATGCAATAAAATTTGGTGTTAGTAACAATGAAAGCGTAAAAGTT
AAGGTTTTAGGGAAAAGACCTTTAATATTTGATGATGTAATTGTAAGAGTTAGCAAAGATTACAGAACATTTATGCATAT
TGATTATGATGAAGCAAATGCCTGCGGATTTTCAAAGGGAACTTTTGCCTTAATTGTTGGAAAAGATGAAAAATAA

Protein sequence :

MDNLLQDIIEEVVRRVKDEAFIEVEASGRHVHLTREHIDILFGEGHELTRIKDLSQPGQYACKERVTISGPRGKIDNVVV
LGPPRNETQVEVSFTDALVLGSIPPVKLSGDLENTPEITISTERASIALNRGLMVAKRHIHMTPEDAIKFGVSNNESVKV
KVLGKRPLIFDDVIVRVSKDYRTFMHIDYDEANACGFSKGTFALIVGKDEK

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	CAD42070.1	hypothetical protein	Not tested	PAI II 536	Protein	8e-36	43

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
pduL	NP_561821.1	propanediol utilization protein	VFG1589	Protein	4e-36	43