|
Name : secD (XCC2376) Accession : NP_637730.1 Strain : Xanthomonas campestris ATCC 33913 Genome accession: NC_003902 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2808293 - 2810161 bp Length : 1869 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGGTGCCGCGCGGGACTGTCGCAATGCTCGAATTTCCTCGCTGGAAGTATTTCCTGATCCTGGTGGTGCTGGCGGTCAG CGCGTTGTATGCGCTGCCCAACGTCTACCAGAAAGACCCGTCCGTGCAGATCACCGCCAGCCGCGGTGCGCAGCTGGACG ACGCGTTGCGCAGCCGGATCGACGCCGACCTCAAGAGCGCCGGCATCACGCCCAAGGCGGTGACCCGGGAAGGCGACAGC CTGATGGTGCGCCTGCCCACCCTGCAGGCGCAGACCCGTGCCAACGACGTGTTGCGCCAGCAGCTGGGCGAGAACTACAC GGTGGCGCTGAACCTGGCATCCACGGTGCCGGACTGGCTCGCCAAGCTGGGCGGCCGGCCGATGGTGCTGGGTCTGGACC TGGTCGGCGGCGTGCACTTCGCCATGCAGGTCGATCAGAAAGCCGCGCTGGAAAAGCGCCTGGAGGGCTTTGCCGAGGAC ATCCGCACCACGCTGCGCGATGGCCGCATTGCGTATCGCTCGGTGGAGCGTCGTGGCGACAACAGCATCCAGGTCTCGTT GGGCGAGGGCGCCAGCGCCGATGCCGCGCGGACCGCGCTGGCCAAGTCGCAGCCAACGCTGACCTACGACGTCAGCGGCC AGACCATCTCGGTGAAGGTGCCGGAGGCCGAACTCAAGCAGATCGCCAGCGGTGCGATCGAGCAGAACCTCACCACCTTG CGCAATCGTGTCAACGCGCTGGGCGTGTCCGAGCCGACCATCCAGCGCCAGGGCGAAGACCGCATCGTGGTCGAATTGCC GGGCCTGCAGGACACCGCCGAGGCCAAGCGCCTGATCGGTGCCACGGCCTCGCTGGAATTCCGTGCGGTGGTCGAAGGCA ATGCCGAAGATGCCGTGCGCAGCGGCACCATTCCGCCGGAAGCCAAGGTCTACCGTCTGCGCGACAGCAATGCACCGGTG TTGCTCAACAAGCGCGCGCTGGTGACTGGTGATCAGATGGTCAGTGCCAGCGTCAGCAACGACCAGAACGGCATGCCGGC GGTGGCGGTGACGCTCAACAACGTCGCCGGCCAGCGCATGCTCGACTACACCAGCGCCAATGTCGGCAAGCTCATGTCGG TGGTCTACATCGAGCGCATTCCCACCGTGACCATGGTTGACGGCAAGGAAGTGCGCAGCGTGCGGGTCAAGGAAGAGGCT CTGTCGCCGACCCGCATCGCCGGCGTGTTCGGCAAGAATTTCCAGACCACCGGTCTGGAAAAGACCGAAGCCGAGAACCT GGCCAAGTTGTTGAAGTCCGGCTCGCTGGCCGCGCCGATGGATTTCGTCGAGGAATACGTGATTGGCCCGAGCCTGGGTG CGGAGAACGTGGAGCGCGGCGTCACTGCGGTGGTGTTCTCGTTCGTGTTCACCCTGGTGTTCTTCACCGTCTACTACCGC ATGTTCGGCGCGATCACCTCGGTGGCGCTGCTGTTCAACCTGCTGATCGTGATCGCGGTGATGTCGCTATTCGGCGCCAC CATGACGCTGCCGGGCTTTGCCGGTCTGGCGTTGTCGGTGGGTCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGTA TCCGCGAAGAATTACGTCTCGGCGTGCCGCCCAAGTCGGCGATCGTGGCCGGTTACGAGAAGGCCGGTGGCACCATCCTC GACGCTAACCTGACCGGGTTGATCGTCGGCGTGGCGCTGTACGCGTTCGGTACCGGCCCGCTGAAGGGCTTCGCGCTGAC CATGATCATCGGTATTTTCGCCTCGATGTTCACCGCGATCACCGTGTCGCGCGCGCTGGCGGTGCTGATCTATGGCAGCC GCAAGAAGCTGAAGTCTGTCGCTATTTAA Protein sequence : MVPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDADLKSAGITPKAVTREGDS LMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAED IRTTLRDGRIAYRSVERRGDNSIQVSLGEGASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLTTL RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPV LLNKRALVTGDQMVSASVSNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEA LSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYR MFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTIL DANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-103 | 46 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-103 | 46 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-103 | 46 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-103 | 46 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 5e-103 | 45 |
