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Name : secD (CPS_1122) Accession : YP_267865.1 Strain : Colwellia psychrerythraea 34H Genome accession: NC_003910 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1144707 - 1146554 bp Length : 1848 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAACAAATACCCTTTATGGAAGACACTAATGGTGGCAATGATTGTCGCTATAGGTGCGCTCTATGCCACACCAAT GCTATACGGCGAATCACCTGCAGTGCAAGTTTCAGGCTTACGCGGTGTTGAAGCAAATGCTGCTACGCTTGATAGTATCA AAGCACAATTAGAAGAAAGTAACCTAAGCTTTGCTAGTATTGCTTTAGAGAATGGACAAGTATTAACACGTTTTAATAAT ACTGAAGATCAACTTAAAGCGCGTGATGTATTAGATGATAATTTAGGTAAACAGTTTTCAGTTGCTTTAAATTTAACGCC TAATACTCCAAGCTGGCTAGCAGCAATTGGCGGAAAGCCAATGAAGTTAGGTTTAGATTTAAGTGGTGGTGTTAGCTTCT TGATGGAAGTGAACATGAAAGAGGCCATCAATAAAGCTAAAATAGGTATGGTGAGTGATTTTCGCGGTGATTTACGCAAT GAAAAAATTCGCTACCGCAGTGTTAAAGAAGTTAATAATTCTGTAGTCGTTGTTTTTAGAAAAATTGAAGACTTAGAAGC GGGACAATCATTACTGAAACAGCGTTACCGTGATTTGCTGCTAAGTACTGATGACGATACGCTAACGCTAACAGCAAAAA TGACGGAGCCAAAGCTTAAAGAAATTCGTGAATATGCTTTACAGCAAAACATCACTATTATTCGAAATCGTGTCAATGAG TTAGGGGTTGCCGAGCCGCTTGTTCAACGCCAAGGCAAAAAACACATCGTTATCGAATTACCAGGTGTTCAAGACACTGC CAAAGCGAAAGAAATCCTTAATGCTACCGCAACCATTGAATTTAGATTAGTCGATACCGAAGGTGACTTGTCTAATGCAT TAAATGGTCGTATTCCAGCAAACTCTATTTTGTTAACAGATAAAGACGGTAGACCAAGCTTATTGAAAAAACGCATCATG TTAACCGGTGATCACATCACTGATGCTAAATCAGGCTTTGATGAGTACTCTCGACCACAAGTGAATATTTCACTTGATAG TGCTGGAGGCTCTAAAATGTCTAGTGGTACCAAAAGTAATATTGGTAAACCAATGGCAACGGTATTTATTGAATATAAAG CGACTGACAAAAAAGATGCTGAAGGCAACATCATTTTTGAAAAACAACAAGAAATCATCTCTGTTGCAACTATTCAATCA CGTTTAGGTAAAACCTTCCGTATTACTGGAGCAGGTAGTGCTGCTGAAGCGCATAACCTAGCATTATTATTACGTGCAGG GGCTTTGATTGCACCAATCACCATCGTAGAAGAGCGAACTGTAGGGCCTACATTAGGAGCTGAAAACGTAAGACTTGGTT TCGAAGCTATCTTAATGGGCTTTGGTTTAGTGTTTATCTTTATGATGATTTATTACCGTGCCTTTGGTGTGGTGGCTAAC CTTGCTCTAGGTGCAAACTTAGTGTTGATTGTTGGTGTTATGTCGATGATTCCTGGCGCTACTTTAACATTACCGGGTAT GGCTGGTATCGTATTAACAGTTGGTATGGCGGTCGATGCTAACGTGCTTATTTTTGAACGTATTCGTGAAGAAATACGTG AAGGTAAAACGATTCAACAATCAATTCATCAAGGTTATGATGCAGCATTTTCAACGATTATTGATGCCAACATCACTACC TTAATTGCAGCGTTAATTCTGTTTGCAATTGGTACTGGACCTGTGAAAGGTTTTGCCGTGACGTTATCTATTGGTATTAT TACTTCAATGTTTACCTCGGTTGTTGGTACTCGTGCCGTAGTTAACGCTATTTGGGGCGGTAAACGCCTTGAAAAGCTTC CGATATAA Protein sequence : MLNKYPLWKTLMVAMIVAIGALYATPMLYGESPAVQVSGLRGVEANAATLDSIKAQLEESNLSFASIALENGQVLTRFNN TEDQLKARDVLDDNLGKQFSVALNLTPNTPSWLAAIGGKPMKLGLDLSGGVSFLMEVNMKEAINKAKIGMVSDFRGDLRN EKIRYRSVKEVNNSVVVVFRKIEDLEAGQSLLKQRYRDLLLSTDDDTLTLTAKMTEPKLKEIREYALQQNITIIRNRVNE LGVAEPLVQRQGKKHIVIELPGVQDTAKAKEILNATATIEFRLVDTEGDLSNALNGRIPANSILLTDKDGRPSLLKKRIM LTGDHITDAKSGFDEYSRPQVNISLDSAGGSKMSSGTKSNIGKPMATVFIEYKATDKKDAEGNIIFEKQQEIISVATIQS RLGKTFRITGAGSAAEAHNLALLLRAGALIAPITIVEERTVGPTLGAENVRLGFEAILMGFGLVFIFMMIYYRAFGVVAN LALGANLVLIVGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIREGKTIQQSIHQGYDAAFSTIIDANITT LIAALILFAIGTGPVKGFAVTLSIGIITSMFTSVVGTRAVVNAIWGGKRLEKLPI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-110 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-110 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-110 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-110 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-110 | 48 |
