Gene Information

Name : lolD (CPS_3478)
Accession : YP_270152.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Resistance
Product : lipoprotein releasing system ATP-binding protein LolD
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3616564 - 3617340 bp
Length : 777 bp
Strand : -
Note : identified by similarity to SP:P75957; match to protein family HMM PF00005; match to protein family HMM TIGR02211

DNA sequence : 
ATGAGTAAAGTATTACAATGTTGTCAGCTTTCTAAGTCATATATACAAGGTGACATCGAAACTAAGGTCTTAAATGACTT
AGAACTAAGTGTTGATAAAGGAGAGTTACTTGCGGTAGTTGGGAGCTCTGGCTGCGGAAAAAGTACCTTTTTACATCTTG
CTGGTGCATTAGACTCGCCAAGTTCAGGCAAGGTGCTTATTAATAATATTGATATCCATCAGTTGTCTGATAAAGAAAGA
GCCAAATTTAGAAATGAACATATTGGCTTTATTTATCAATTTCATCACTTGATGATGGAGTTTAATGCTCAAGAAAATGT
AGCGATGCCATTAATGATCCGAGGTGAAAAACCAAAGGATGCATTGTTAGCAGCTAAAGAAATGCTCGACCAAGTGGGTT
TGTCTCACCGAATTGATTACCGACCTTCACAATTGTCAGGCGGCGAGCGTCAGCGTGTAGCAATAGCTCGTGCATTGGTG
ACTAAGCCATCTTTAGTGTTAGCTGATGAGCCTACCGGTAACTTAGATAGCGATACAGCGGAACAAATTTATCAATTGAT
TCGTAGCTTAAATAAAACAGCCCAGACAAGTTTTGTTATCGTCACTCATGATCTGGTCTTAGCGAATCGTATGGATAGGC
AAGTAAAGTTAGTTCAAGGGCAATTAAGACCACTTTCGGATAACAGTGAGCAAGCATTACCTCCTACTTCAAGTATCACC
GATCCTGCGAATAACATTAAAGATAATGAACCTCAGGCAAATGAACGTCATGTTTAA

Protein sequence : 
MSKVLQCCQLSKSYIQGDIETKVLNDLELSVDKGELLAVVGSSGCGKSTFLHLAGALDSPSSGKVLINNIDIHQLSDKER
AKFRNEHIGFIYQFHHLMMEFNAQENVAMPLMIRGEKPKDALLAAKEMLDQVGLSHRIDYRPSQLSGGERQRVAIARALV
TKPSLVLADEPTGNLDSDTAEQIYQLIRSLNKTAQTSFVIVTHDLVLANRMDRQVKLVQGQLRPLSDNSEQALPPTSSIT
DPANNIKDNEPQANERHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_270152.1 lipoprotein releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 1e-35 45
lolD YP_270152.1 lipoprotein releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 5e-35 43
lolD YP_270152.1 lipoprotein releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 3e-38 42