Gene Information

Name : CPS_5040 (CPS_5040)
Accession : YP_271678.1
Strain : Colwellia psychrerythraea 34H
Genome accession: NC_003910
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5358464 - 5359204 bp
Length : 741 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGACAACTCAAGTGGATATTGCTGGCGTCAATAATAAAGCGACGGTTAGCCAAAATACTGTCATTGAAACGACTCATTT
GTGTAGAGAATTTGGTCAAGGTGATACGTTAGTTAAAGCGCTGACTGATGCCAATATCACCATAGAACGAGGTGAATTTA
CCGCGATAATAGGCCCTTCTGGCTCAGGTAAATCAACTTTATTGCAATTAATTGGTGGTTTGGATAATTCAAGTTCAGGT
GATGTGTTTTTAGATAATAAAAATATTAATCGTATGACAGGCACCGAGTTGTCAGATTTCAGACGTGATCATATTGGCTT
TATTTTTCAAGCCTATAACTTGATACCTGTGTTAAGCGCCCGAGAAAACATTGAGTATATTATGTTACTGCAAGGCGTAC
CTACAGCAGAGCGAAACAAACGCGTAGATAAGCTAATGCATGCGGTAGGTTTAGAAGGTTTGGGAGATCGTCGCCCTGCT
GAATTATCAGGGGGGCAACAGCAACGCGTAGCCGTAGCAAGGGCTATGGTATCAAAGCCTAGTATTATTTTAGCGGATGA
ACCGACAGCTAATCTAGACTCGAAAACAGGTGCTGATTTGCTTGATATGATGAAAGAATTAAATGAAAAGCAAAATATGA
CCTTTGTATTTTCAACGCATGATCCAAAGATAATGGAACGAGCCAAACGTATTATTCGTTTGGTTGATGGCTGCATTGTT
GATGATGAGCGCAGAAGTTAA

Protein sequence : 
MTTQVDIAGVNNKATVSQNTVIETTHLCREFGQGDTLVKALTDANITIERGEFTAIIGPSGSGKSTLLQLIGGLDNSSSG
DVFLDNKNINRMTGTELSDFRRDHIGFIFQAYNLIPVLSARENIEYIMLLQGVPTAERNKRVDKLMHAVGLEGLGDRRPA
ELSGGQQQRVAVARAMVSKPSIILADEPTANLDSKTGADLLDMMKELNEKQNMTFVFSTHDPKIMERAKRIIRLVDGCIV
DDERRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 7e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CPS_5040 YP_271678.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 3e-45 49
CPS_5040 YP_271678.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-39 45
CPS_5040 YP_271678.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 4e-44 44
CPS_5040 YP_271678.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-40 42