|
Name : ccmF (SPO1880) Accession : YP_167117.1 Strain : Ruegeria pomeroyi DSS-3 Genome accession: NC_003911 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 2002798 - 2004762 bp Length : 1965 bp Strand : + Note : identified by similarity to SP:Q00500; match to protein family HMM PF01578; match to protein family HMM TIGR00353 DNA sequence : ATGATTACGGAACTCGGTCACTTCGCCCTCATCCTCGCCTTCATGGTCGCCATCGTGCAAATGGTCGTGCCCTTGATCGG AGCCCATAAACGCTGGCCCGGCTGGATGGCCCTGGCCGAACCGGCGGCAGGGGCGCAATTCCTGCTCACCGCCTTTGCCT TTGCCGCGCTGGTCTGGGCCTTTGTGACCTCGGATTTCTCGCTGCGGCTGGTGGTGTTGAACAGCCATTCGGCCAAGCCG ATGCTGTACAAGATCAGCGGCACATGGGGCAATCACGAGGGGTCCATGCTGCTCTGGGTGCTGATCGTCACCCTGTTTGG CGCCATGGCGGCCTGGTTTGGCGGCGGTCTGCCGCCGACGCTCAAGGCCCGCGTGCTGGCGGTGCAATCGGCGATTGCGG TGGCGTTCTTCGCCTTCATCCTGTTTACCTCGAACCCGTTCCTGCGGCTGGCGGTGCCGCCCTTTGACGGGCAGGACCTG AACCCGCTGTTGCAGGATCCGGGCCTCGCGTTCCATCCGCCGTTCCTCTATCTCGGCTATGTGGGCCTGAGCATGGCGTT TTCCTTTGCCGTGGCTGCCCTGATCGAGGGGCGCGTCGATGCCGCCTGGGGCCGCTGGGTGCGGCCCTGGACGCTTGCGG CCTGGATTTTCCTGACCATCGGGATCGCGCTGGGCTCGTGGTGGGCCTATTACGAGCTGGGTTGGGGCGGGTTCTGGTTC TGGGATCCGGTGGAAAATGCCAGTTTCATGCCCTGGCTGCTGGCCGCCGCCTTGCTGCATTCGGCCATCGTGGTGGAAAA GCGCGAGGCGTTGAAAAGCTGGACCATCCTGCTGGCGATCCTTGCCTTCGGCTTCTCGCTTATCGGGACGTTCATCGTGC GCTCGGGCTTGCTGACCAGCGTGCATGCCTTTGCCAATGACCCTGAGCGCGGCGTGTTCATCCTGATTATCCTCGGCCTT TTTACCGGCGGCGCGCTGACACTGTTCGCCGCGCGCGCGCAGGCGATGGAGGCCAAGGGCGTCTTTTCCATGGTCAGCCG GGAAAGCGCGCTGGTGCTCAACAATATCCTGCTGGCGGTGTCGGCCTTTGTGGTGTTCTTCGGAACGCTCTGGCCGATCC TGGCCGAGATGTTCTTTGACCGCAAACTCTCGGTCGGGGCGCCGTTCTTCAACGCGGCCTTCACACCGTTCATGGTGGCG CTGGGGGTGGTGTTGCCGCTGGGCGCCATGCTGCCGTGGAAACGCGGCAAGCTGGGCCGGGTGGCGCACAGCCTGCGCTA TGCCTTTGTGCTGGCGCTGGCGCTGGCGATCCTGGTCTGGGTCATGCAGACCGGGCGCAGCGCGCTGGGTCCGGTGGGTC TGTTCCTGGGGGCCTGGATCACCTTTGGCGCTATTGTCGATCTGTGGTCGCGCACCGGGCGCAGTGGCAGCGTGGCGCGG CTGTTCCGTCTGCCGCGCGCCGACTGGGGCAAGGCGGTGGCCCATTCCGGTCTGGGTGTCACCATGTTCGCGATTGCCGG GCTGATGGCCTGGGAGGTCGAGGATATCCGCGTCGCCCGTCTCGGCGAACCTTTCGAGGTGGGCGGGTTCACCCTGACGC TCGACGGGGTCGAGCGCGTGCAGGGGCCCAACTATATCTCGACCATGGGCAGTGTCCGCCTGGAACAGGCGGGTCGGGCC ATCGACACGCTGCACCCCGAAAAGCGCGACTATCCGGTTGCGCGCATGCCCACCACAGAGGCGGCGATCGACTATCGCAT TCTGCGCGATGTCTATGTTGTGATCGGCGACCAGCAGGACGACGGCGGCTGGACCATACGGACCTATATCAAGCCCTTTG CCAACTGGATCTGGGGCGGCTGTATCCTGATGGCGCTTGGCGGCGCGCTCAGCCTCAGCGACCGGCGCTTCCGGGTGGCG GCGGGTGCGCGCAAGGCACCGGCCGGCGGGGTGCCCGCGGAATGA Protein sequence : MITELGHFALILAFMVAIVQMVVPLIGAHKRWPGWMALAEPAAGAQFLLTAFAFAALVWAFVTSDFSLRLVVLNSHSAKP MLYKISGTWGNHEGSMLLWVLIVTLFGAMAAWFGGGLPPTLKARVLAVQSAIAVAFFAFILFTSNPFLRLAVPPFDGQDL NPLLQDPGLAFHPPFLYLGYVGLSMAFSFAVAALIEGRVDAAWGRWVRPWTLAAWIFLTIGIALGSWWAYYELGWGGFWF WDPVENASFMPWLLAAALLHSAIVVEKREALKSWTILLAILAFGFSLIGTFIVRSGLLTSVHAFANDPERGVFILIILGL FTGGALTLFAARAQAMEAKGVFSMVSRESALVLNNILLAVSAFVVFFGTLWPILAEMFFDRKLSVGAPFFNAAFTPFMVA LGVVLPLGAMLPWKRGKLGRVAHSLRYAFVLALALAILVWVMQTGRSALGPVGLFLGAWITFGAIVDLWSRTGRSGSVAR LFRLPRADWGKAVAHSGLGVTMFAIAGLMAWEVEDIRVARLGEPFEVGGFTLTLDGVERVQGPNYISTMGSVRLEQAGRA IDTLHPEKRDYPVARMPTTEAAIDYRILRDVYVVIGDQQDDGGWTIRTYIKPFANWIWGGCILMALGGALSLSDRRFRVA AGARKAPAGGVPAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 7e-114 | 49 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 6e-92 | 48 |
