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Name : secD (XAC2511) Accession : NP_642826.1 Strain : Xanthomonas axonopodis 306 Genome accession: NC_003919 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2939722 - 2941566 bp Length : 1845 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTCGAATTTCCTCGCTGGAAGTACTTCCTGATCCTGCTGGTACTGGCCGTCAGTGCGCTGTATGCGCTGCCCAACGT GTACCAGAAGGACCCGTCCGTGCAGATCACCGCCAGCCGCGGTGCGCAGCTCGACGACGCACTGCGCAGCCGCATCGACG GTGAGCTCAAGAGCGCCGGCATCACCCCGAAGGCGATCACGAAAGAAGGCGACAGCCTGATGGTGCGGTTGCCTTCGCTG CAGGCGCAGACACGCGCCAACGACGTGTTGCGTCAGCAGCTGGGCGAGAACTACACCGTGGCGCTGAACCTGGCCTCCAC CGTGCCGGACTGGCTGGCCAAGCTGGGCGGCCGACCGATGGTGCTGGGTCTGGACCTGGTGGGCGGTGTGCACTTCGCCA TGCAGGTCGATCAGAAGGCCGCGCTGGAAAAGCGCCTGGACGGGTTTGCCGAAGACATCCGCACCACCTTGCGCGATGCG CGTATCCCGTACCGCTCGGTGGAGCGTCGCGCCGACAACAGTATCCAGGTCAACCTGGGCGAGGGCGCCAGTGCCGACGC CGCGCGCGTGGCGCTGGCCAAGGCGCAGCCGACCCTGACCTACGACGTCAGCGGCCAGAACATCGCCGTGAAGGTGCCGG AGGCCGAACTCAAGCAGATCGCCAGCGGTGCGATCGAGCAGAACCTCACCACCTTGCGCAACCGCGTCAACGCACTGGGC GTGTCCGAGCCGACCATCCAGCGCCAGGGCGAGGACCGCATCGTGGTCGAACTTCCCGGTCTGCAGGACACCGCCGAAGC CAAGCGCCTGATCGGTGCCACCGCCTCGCTGGAATTCCGCGCCGTGGTCGACGGCAACGCCGACGATGCCGTGCGTAGCG GCAACATTCCGCCGGAGGCCAAGGTCTATCGCCTGCGCGACAGCAACGCTCCGGTGTTGTTGAACAAACGCGCGCTGGTG ACTGGCGACCAGATGGTCGATGCCACGGTGGGTAATGACGAAAACGGAATGCCGGCAGTGAATGTGACGCTCAATAATGC TGCAGGCCAGCGTATGTTTGACTATACGAGTGCGAACGTCGGCAAGCTGATGTCCGTGGTCTTCATTGAGCGAGTTCCAA CTGTGACCGTAGTTGACGGCAAGGAAATTCGAAGTGTACGAGTTAAGGAAGAAGCACTGCCTTCGACGCGTATCGCGGGT GTATTTGGCAAGAATTTCCGTACCACCGGCCTGGAAAAGAAAGAAGCCGAAAATCTGGCCAAGCTGCTGAAATCCGGTTC GTTGGCCGCGCCGATGGACTTCGTCGAGGAATACGTGATCGGTCCGAGCCTGGGTGCGGAGAACGTGGAGCGTGGCGTCA CGGCGGTGGTCTACTCGTTCCTGTTCACCCTGGTGTTTTTCACCATCTACTACCGCGTGTTCGGCGCGATCACCTCGGTG GCGCTGCTGTTCAACCTGCTGATCGTGGTGGCGGTGATGTCGCTGTTCGGCGCCACCATGACGCTGCCGGGTTTCGCTGG CCTTGCGCTGTCGGTGGGTCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGTATCCGTGAAGAGTTGCGGCTCGGCG TGCCGGCCAAATCGGCGATCGCGGCCGGTTACGAAAAGGCCGGCGGCACCATCCTCGATGCGAACCTGACCGGCCTGATC GTGGCGGTGGCCTTGTACGCGTTCGGTACCGGCCCGCTGAAGGGTTTCGCGCTGACCATGATGATCGGTATTTTCGCCTC GATGTTCACCGCGATCACGGTCTCGCGTGCGCTGGCGGTGCTGATCTACGGCAGCCGCAAGAAGCTGAAGTCTGTCGCTA TTTAA Protein sequence : MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSL QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA RIPYRSVERRADNSIQVNLGEGASADAARVALAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALV TGDQMVDATVGNDENGMPAVNVTLNNAAGQRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAG VFGKNFRTTGLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLI VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-106 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-106 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-106 | 45 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-105 | 45 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 7e-106 | 45 |
