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Name : y2090 (y2090) Accession : NP_669403.1 Strain : Yersinia pestis KIM Genome accession: NC_004088 Putative virulence/resistance : Virulence Product : N-terminal fragment of inner membrane permease Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 2300766 - 2302550 bp Length : 1785 bp Strand : + Note : ATP-binding protein of ABC transporter; HlyB-like Type I secretion component; similar to RTX toxin secretion protein B; residues 36 to 586 of 594 are 46.47 pct identical to residues 47 to 597 of 720 from GenPept : >gb|AAF94605.1| (AE004223) RTX toxin tran DNA sequence : ATGGAAAATCATGTTCATTCCGCGCTGATATGTGCATCCAGACTGATTCGGTTGGCCGGGTTAAATCCAATGGATATCGA GACATTTAGCCAAAAGGTCGCCATAGACACCTCAGTAAAAACAACGCTAGCGTCTCTTCAGCGTTATATCGTTCAATTTT CACAAACAGCTTCTGTCCGTTTTAAAATACGTAAGCAAGCATTGGAAAAAATAAGGCAGGAGCAGTTACCGCTGGCATTT CGTGACCGTCAGGGGAATTTTATCTTGCTGGCGCGGATGAATGAACAACAAGTGTTATTACAGTACGCTGATGATAAAAA ACCACAAATGTTAAGTTATCAATCACTTGCTGACATGTGGGGTGGAATGATCTTATGCTGTAGTCATTCGCGCTTTGATA TTCGCTGGTTTATCCCGCCACTACGTCGCCATCGTAAGCCATTAATGCAAGTCCTATTGTTATCATTATTGCTGCAATTC CTAGCGTTGATCTCCCCTCTCTTTTTTCAAGTTATCATGGACAAAGTACTCGTTCATCATGCATTAACCACACTGGAAGT GCTAATCTTCATCTTAGTCATTGTCGGTGTGTATGAGGTTATATTAAAAGGCTTGCGAGAATATATTTTCACGCATACGA CAACACGAGTGGATATATTATTAGGCGGGAAGTTGTTTCAACATTTAATCAGGTTGCCGTTAAGTTACTTTAAACAACGT CATGTCGGTAATATTGTTGCCAGAGTCCGTGAGTTAGATAATATCCGTGATTTCATCACGGGTTCGGCCCTGACATTATG TGTTGATGTGGTTTTTACCCTCGTGTTGTTTATTGTTATGTGGTGTATATCCCCGTTATTAACCTTAATAATACTGAGCA CGTTGCCTTTTTATCTGTTATTGGCCGTGATGACCACTCGGCCGTTGCAAAAAAAAGTAGAAGCTCTCTGTGGTTTTGCC GCGCAAAACGGCGCGTTTTTGACTGAAACGGTGTCTGGGGTGGAAACCGTAAAAAGTTTGGCGCTGGAGCCACGGATGCG CCAGCGCTGGGAAAGCCAAACTCGTGATTTTGCTCAGGCTAATTTTCAGGTACAAAATTTGCAAAATCTCAGTAGCCAAG CGGCTCAACTCTTGCAAAAGGTGGCTGGCGCACTGGTGATCGTGATAGGTGCGTATCACGTTATGTCTGTACAGCTCAGT ATTGGTCAGTTGATTGCATTTAATATGTTGGCACTACAGGCATTAATGCCGATGAGTAAACTGGTTGATTTATGGCAGCA GAGCATCCGTGCTCAGGTTGGGCTGAAATTAATATCAGATATTCTAAGCTTGCCGGTTGAACCGGAGGCAGATCCGGCGG CCCCGCACCCTGCGATTAGCGGCAATATCCTACTAAAAAATGTGGCCTTCCGTTATCGCCCCGATCTTGATCCTGTCTTA CATGATTTAAACTTATCTATCCGCGCGGGTGAACATATCGGGTTGGTGGGGCCGTCAGGATCGGGGAAAAGCACCGTGGC CCGGTTATTACAACGGCTCTATAACACCGAACAAGGGGTCATTACGATAGATGGTTATCCGATCAACCATTTATCACCAG AATATTTACGGCGACAAGTGGGGGTGGTGATGCAGGAAAGCTATCTGTTTAACCGCACCGTGCGAGAAAATATTGCCCAT TCACGGCCAACAGCCACCTTGACCGAGGTGGTCAATGCCGCCAGTTTAGCGGGTGCTAACGCCTTTATTTTGGCGCTACG CGAATCCCCGGATCTTAATTTTTGA Protein sequence : MENHVHSALICASRLIRLAGLNPMDIETFSQKVAIDTSVKTTLASLQRYIVQFSQTASVRFKIRKQALEKIRQEQLPLAF RDRQGNFILLARMNEQQVLLQYADDKKPQMLSYQSLADMWGGMILCCSHSRFDIRWFIPPLRRHRKPLMQVLLLSLLLQF LALISPLFFQVIMDKVLVHHALTTLEVLIFILVIVGVYEVILKGLREYIFTHTTTRVDILLGGKLFQHLIRLPLSYFKQR HVGNIVARVRELDNIRDFITGSALTLCVDVVFTLVLFIVMWCISPLLTLIILSTLPFYLLLAVMTTRPLQKKVEALCGFA AQNGAFLTETVSGVETVKSLALEPRMRQRWESQTRDFAQANFQVQNLQNLSSQAAQLLQKVAGALVIVIGAYHVMSVQLS IGQLIAFNMLALQALMPMSKLVDLWQQSIRAQVGLKLISDILSLPVEPEADPAAPHPAISGNILLKNVAFRYRPDLDPVL HDLNLSIRAGEHIGLVGPSGSGKSTVARLLQRLYNTEQGVITIDGYPINHLSPEYLRRQVGVVMQESYLFNRTVRENIAH SRPTATLTEVVNAASLAGANAFILALRESPDLNF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 6e-85 | 42 |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 7e-85 | 42 |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 6e-85 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| y2090 | NP_669403.1 | N-terminal fragment of inner membrane permease | VFG1557 | Protein | 3e-85 | 42 |
| y2090 | NP_669403.1 | N-terminal fragment of inner membrane permease | VFG1501 | Protein | 3e-85 | 42 |
| y2090 | NP_669403.1 | N-terminal fragment of inner membrane permease | VFG0907 | Protein | 3e-85 | 42 |
| y2090 | NP_669403.1 | N-terminal fragment of inner membrane permease | VFG0841 | Protein | 6e-79 | 42 |
| y2090 | NP_669403.1 | N-terminal fragment of inner membrane permease | VFG1269 | Protein | 2e-87 | 41 |
