Gene Information

Name : PFL_0127 (PFL_0127)
Accession : YP_257274.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : ECF family RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 133253 - 133753 bp
Length : 501 bp
Strand : -
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
ATGTCATCACCCGAGTTCGCCGTACAGACGCTCTACAGCCATCACCATGGCTGGCTCAACCGCTGGCTGCGCCAGCGCCT
GGGCAATGCCGCGGATGCTGCCGACCTGGCTCAGGACACCTTCGTACGCCTGCTGCAGAAAACTGAACGTCTGGAACTCA
AGGCCCCCCGGGCTTTTTTACGCACCATCGCCCGGGGGCTGGTAATCGATCACTGGCGCCGCGAGGAAATCGAACGTGCC
TATCTGGAAACCATCGCCCACTTGCCCGAAGCCGAAACACCCGGCGCTGAAGCTCGGGCGTTGATTCTGGAGCTGCTGGA
AAGCATTGCGCGGATGCTTGAAGGGCTGAAGCCGAAAGTACGTCAGGCTTTTCTCCTGGCTCAGTGCGAGGAACTTACCC
ACAAGCAGATTGCTCAGCAGATGGGCCTATCCCTGCGTACCGTCGAGCGTTATGTCGCCCAGGCGCTCTACCATTGCTAC
CTGCTGCGCTACGAGAGCTGA

Protein sequence : 
MSSPEFAVQTLYSHHHGWLNRWLRQRLGNAADAADLAQDTFVRLLQKTERLELKAPRAFLRTIARGLVIDHWRREEIERA
YLETIAHLPEAETPGAEARALILELLESIARMLEGLKPKVRQAFLLAQCEELTHKQIAQQMGLSLRTVERYVAQALYHCY
LLRYES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-30 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_0127 YP_257274.1 ECF family RNA polymerase sigma factor VFG1049 Protein 8e-31 44