Gene Information

Name : PFL_0145 (PFL_0145)
Accession : YP_257292.2
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : ECF family RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 169840 - 170349 bp
Length : 510 bp
Strand : +
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
ATGCAAGCCACCACTGACGGCAACGCTCAACTCCATCGTCTGTATCAGGATCATCACGGCTGGTTGCAGGGCTGGTTGCG
CAAGCGCCTGGGCGATCGCGAGCATGCCGCGGACGTGGCGCAGGACACCTTCCTGCGCCTCTTGCTCTCGGGGCGTTTTC
CCGGGCAGCAGGAAAGCCGCAGCTACCTGGCGCAGATCGCCCGCAACCTGGTGGTCGACCAATGGCGGCGCGCGCGCATC
GAGCGCGCCTACCTGGAAAGCATCGCCCACTTGCCGGAGCCGCAGACCCCCTCCCTGGAAAGCCGCGCGCTGATTCTCGA
AACCCTGATGCAGATCGACGCCATGCTCGACCGCATGCCGGACAAGGTGCGCCAGGCCTTTGTCATGTCGCAGTTCGAGG
GGCTGGGCTATGCGCAGATTGCCGAGCGCCTGGAGGTTTCCGTCAGCTCGGTGCAGAAGTACATGACCCGTGCGATCCAG
GCCTGTTACCAGGTGCTCTACGCAGAATGA

Protein sequence : 
MQATTDGNAQLHRLYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESRSYLAQIARNLVVDQWRRARI
ERAYLESIAHLPEPQTPSLESRALILETLMQIDAMLDRMPDKVRQAFVMSQFEGLGYAQIAERLEVSVSSVQKYMTRAIQ
ACYQVLYAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 4e-35 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_0145 YP_257292.2 ECF family RNA polymerase sigma factor VFG1049 Protein 2e-35 46