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Name : ccmF (PFL_1685) Accession : YP_258811.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : cytochrome c-type biogenesis protein CcmF Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 1885948 - 1887936 bp Length : 1989 bp Strand : + Note : identified by similarity to SP:P45404; match to protein family HMM PF01578; match to protein family HMM TIGR00353 DNA sequence : ATGAGTTCCGCACTGTTCGTTCCCGAACTCGGTCACCTGGCGATGATCCTCGCCCTGTGCTTCGCCCTGGTCCAGGCCGT GGTGCCGCTGCTGGGGGCCTGGCGCGGTGATCGCCTGTGGATGAGCCTGGCCCAGCCGGCTGCCTGGGGCCAGTTCGCCT TCCTGGCGTTCGCCTTCGGCTGCCTGACCTACGCTTTCATGAGCGACGATTTCTCGGTGGCCTATGTCGCCAGCAACTCC AACAGCGCCTTGCCCTGGTACTACAAGTTCAGTGCCGTGTGGGGGGCTCACGAAGGCTCGCTGCTGCTCTGGGCACTGAT CCTCGGTGGCTGGACCTTCGCCGTGTCGGTGTTCTCGCGCCAGTTGCCCCAGGTGATGCTGGCCCGGGTGCTGGCGGTGA TGGGCATGATCAGCACCGGCTTCCTGCTGTTCCTGATCATGACCTCCAACCCGTTTTCGCGGATCCTGCCCCAGGTGCCG GCCGATGGTCGCGACCTCAACCCGCTGTTGCAGGACATTGGCCTGATCGTTCACCCGCCGATGCTCTATATGGGCTATGT GGGTTTTTCGGTGGCCTTCGCCTTCGCCATCGCCGCCTTGCTCGGCGGTCGCCTGGACGCCGCCTGGGCTCGCTGGTCGC GGCCCTGGACCATCGTGGCCTGGGCCTTCCTCGGCATCGGCATCACCCTGGGCTCCTGGTGGGCCTACTACGAACTGGGC TGGGGTGGCTGGTGGTTCTGGGACCCGGTGGAAAACGCCTCGTTCATGCCCTGGCTGGTGGGCACGGCGCTGATCCACTC CCTGGCGGTCACCGAAAAGCGCGGGGTGTTCAAGAGCTGGACCGTGCTGCTGGCGATTGCCGCCTTTTCCCTGAGCCTGC TGGGGACTTTCCTGGTGCGTTCCGGCGTCCTGACTTCGGTGCATGCCTTCGCCTCCGACCCTGAGCGCGGCGTGTTCATC CTGATTTTCCTGCTGTTCGTGGTGGGTGGTTCGCTGACCCTGTTCGCCCTGCGCGCGCCGGTGGTCAAGAGCCAGGTGGG CTTCAACCTCTGGTCGCGGGAAACCCTGCTGCTGGGCAACAACCTGGTGCTGGTGGTGGCGGCCTCGATGATTCTCCTCG GCACCCTGTACCCGCTGGTGCTGGACGCCCTGACCGGCGCCAAGCTGTCGGTGGGCCCGCCGTACTTCAACGCGCTGTTC ATTCCGCTGATGGCCCTGCTGATGGTGGTGATGGCGGTGGGCGTGCTGGTGCGCTGGAAAGACACCCCGGTGAAATGGCT GGTGGGCATGCTCGGCCCGGTACTGCTGGGCAGCGTGGCCCTGGCCGTGGTTGCGGGCATCGCCTATGGCGACTTCAACT GGGCCGTGCTGGCGACCTTCCTGCTGGCGGCCTGGGTGCTGCTGGCCGGGGCTCGCGACATCGTCGACAAGACCCGGCAC AAGGGCCTGATCAAGGGCCTGCCGAGCCTGACCCGCAGCTACTGGGGCATGCAGCTGGCGCACCTGGGCATCGCGGTCTG TGCCCTGGGCGTGGTGCTGTCGAGCCAGAACAGCGCCGAGCGCGATCTGCGCCTGGCGCCGGGCGAATCCATGGAACTGG CCGGCTATCACTTCATCTTCGAAGGCGCCAAGCACTTCGAAGGGCCGAACTTCACTTCCGACAAGGGCACCGTCCGCGTG GTGCGCAACGGCAAGGAAGTGGCGGTGCTGCATCCGGAGAAGCGCCTGTATACCGTGCAGAGTTCGATGATGACCGAGGC CGGGATCGATGCCGGCTTCACCCGCGACCTGTATGTGGCCCTTGGCGAGCCCCTGGGCGATGGCGCCTGGGCGGTGCGGG TACACGTCAAGCCGTTCGTGCGCTGGATCTGGTTCGGCGGCCTGCTCACCGGTTTCGGTGGCTTGCTGGCGGCCCTGGAC CGGCGCTACCGGGTCAAGGTTAAAAGCCGCGTGCGCGAAGCGCTGGGCATGACAGGAGCTACGGCATGA Protein sequence : MSSALFVPELGHLAMILALCFALVQAVVPLLGAWRGDRLWMSLAQPAAWGQFAFLAFAFGCLTYAFMSDDFSVAYVASNS NSALPWYYKFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISTGFLLFLIMTSNPFSRILPQVP ADGRDLNPLLQDIGLIVHPPMLYMGYVGFSVAFAFAIAALLGGRLDAAWARWSRPWTIVAWAFLGIGITLGSWWAYYELG WGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRGVFKSWTVLLAIAAFSLSLLGTFLVRSGVLTSVHAFASDPERGVFI LIFLLFVVGGSLTLFALRAPVVKSQVGFNLWSRETLLLGNNLVLVVAASMILLGTLYPLVLDALTGAKLSVGPPYFNALF IPLMALLMVVMAVGVLVRWKDTPVKWLVGMLGPVLLGSVALAVVAGIAYGDFNWAVLATFLLAAWVLLAGARDIVDKTRH KGLIKGLPSLTRSYWGMQLAHLGIAVCALGVVLSSQNSAERDLRLAPGESMELAGYHFIFEGAKHFEGPNFTSDKGTVRV VRNGKEVAVLHPEKRLYTVQSSMMTEAGIDAGFTRDLYVALGEPLGDGAWAVRVHVKPFVRWIWFGGLLTGFGGLLAALD RRYRVKVKSRVREALGMTGATA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 4e-130 | 58 |
