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Name : glcD (PFL_2269) Accession : YP_259376.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 2530060 - 2531559 bp Length : 1500 bp Strand : - Note : identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387 DNA sequence : ATGACGATTCTCTACGACGAACGCCTCGATGGCGCCCTGCCCGACGTCGACCGCCAGGCCCTGATCCAGGCCCTGCGCCA GCAGCTACCGGAGCTGGAGCTGCTGGACCAGGAGCAACAGCTCAAACCCTACGAATGCGATGGCCTGAGCGCCTACCGCA GCACGCCGATGCTGGTGGCCCTGCCCCGGCACCTGGACCAGGTGCAGCGCATCCTGCAGATCTGCCACGCCCACCGGGTG CCGGTGGTGGCCCGGGGCGCCGGCACGGGCCTGTCCGGTGGCGCCCTGCCCCTGGAAAAGGGCCTGCTGCTGGTGATGGC GCGCTTCAAGGAAATCCTCCAGATCGACCCCGCCGCCCGTTGCGCCCGGCTCCAGCCCGGGGTGCGCAACCTGGCGATCT CCCAGGCCGCCGCGCCCTTCGGCCTGTACTACGCCCCCGACCCCTCTTCGCAGATCGCCTGTTCGATTGGCGGCAATGTC GCGGAAAACGCCGGCGGCGTGCATTGTCTGAAATACGGCCTGACCGTGCACAACCTGCTCAAGGTCCAGATGCTCAGCGT CGAAGGCCAGCCCCTGACCCTGGGCAGCGAGGCCCTGGACGCGCCGGGCTTCGACCTGCTGGCGCTGTTCACCGGCTCCG AAGGCCTGCTGGGGGTGATCACCGAAGTCACGGTCAAGCTACTGCCCAAGCCGCAGATCGCCAAGGTGCTGCTGGCGGCC TTCGACTCGGTGGAAGCCGCCGGCCGCGCCGTGGCCGACATCATTGCCGCGGGCATCATCCCCGGCGGCCTGGAGATGAT GGACAACCTGGCGATCCGCGCCGCCGAGGATTTCATCCATGCCGGCTACCCGGTGGACGCCGAGGCCATCCTGCTGTGCG AGCTGGACGGCGTGGAAGCCGATGTCCACGACGATTGCGAGCGGGTGCGCCAGGTGCTGGAACGGGCCGGCGCCAGCGAG GTGCGCCTGGCCCGGGACGAGGCCGAGCGCGTGCGTTTCTGGGCCGGGCGCAAGAACGCCTTCCCGGCGGTGGGGCGCTT GTCCCCGGACTACTACTGCATGGACGGCACCATTCCCCGCCGCGAGCTGCCGGGGGTGCTGCGGGGCATCGCCCGCCTGG CCGACGAACACCAGCTGCGGGTGGCCAACGTGTTCCATGCCGGCGACGGCAACATGCACCCCTTGATCCTGTTCGACGCC AACCAGCCCGGCGAGCTTGAGCGGGCCGAGGCCCTGGGGGGCAAGATCCTCGAACTGTGCGTGGCAGTGGGCGGCAGCAT CACCGGCGAACACGGGGTGGGCCGGGAGAAAATCAACCAGATGTGCGCCCAGTTCAACCACCACGAGCTGACCCTGTTCC ACGCCATCAAGGCGGCCTTCGACCCCAGCGGCCTGCTCAACCCGGGGAAGAACATCCCGACCCTGCACCGCTGCGCCGAA TTTGGCGCCATGCACATCCACCACGGGCAACTGCCCTTCCCCGAACTGGAGCGATTCTGA Protein sequence : MTILYDERLDGALPDVDRQALIQALRQQLPELELLDQEQQLKPYECDGLSAYRSTPMLVALPRHLDQVQRILQICHAHRV PVVARGAGTGLSGGALPLEKGLLLVMARFKEILQIDPAARCARLQPGVRNLAISQAAAPFGLYYAPDPSSQIACSIGGNV AENAGGVHCLKYGLTVHNLLKVQMLSVEGQPLTLGSEALDAPGFDLLALFTGSEGLLGVITEVTVKLLPKPQIAKVLLAA FDSVEAAGRAVADIIAAGIIPGGLEMMDNLAIRAAEDFIHAGYPVDAEAILLCELDGVEADVHDDCERVRQVLERAGASE VRLARDEAERVRFWAGRKNAFPAVGRLSPDYYCMDGTIPRRELPGVLRGIARLADEHQLRVANVFHAGDGNMHPLILFDA NQPGELERAEALGGKILELCVAVGGSITGEHGVGREKINQMCAQFNHHELTLFHAIKAAFDPSGLLNPGKNIPTLHRCAE FGAMHIHHGQLPFPELERF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 0.0 | 80 |
