Gene Information

Name : PFL_2363 (PFL_2363)
Accession : YP_259470.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : sigma-70 family RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2636402 - 2636908 bp
Length : 507 bp
Strand : +
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
ATGCACAACCACAGCCTCTCTTCGCCCGTCGCCCAGTTGTATGCGAACCATCACGGCTGGCTGCGGGGCTGGCTGCACCG
GCGCCTGGGGCACAGTGCCGATGCCGAGGACCTGGCCCATGACACCTTTATCCGGGTGCTGCGCTCCCAGGAGGATGTGC
GTGAGTTGCGCCAGCCCATGGCGTTCCTGGCCACCATTGCCAACGGCCTGCTGATCAATCGCTGGCGCCGCCAGGCGATC
GAACGGGCTTATCTGGAAGCCCTGGCGGCGCGGCCGGTGGGGGAGGAGCCTTCGCCGGAGGAGCGGCATCTGATGATCGA
GACCCTGTTGCAGCTGGATTCGCTGCTGGTGGGGTTGTCGTCGCGGGTGCGGCAGATTTTCTTTCTGTCCCAGCTCGATG
GCCTGACCTATCCGCAGATCGCTGCGCAGTTGGGCTTGACCGTGGCCCAGGTGCAGCGGGCCATGGGCAAGGCCTTCAGT
GTCTGTTACGCGAGCCGTTTTGAATGA

Protein sequence : 
MHNHSLSSPVAQLYANHHGWLRGWLHRRLGHSADAEDLAHDTFIRVLRSQEDVRELRQPMAFLATIANGLLINRWRRQAI
ERAYLEALAARPVGEEPSPEERHLMIETLLQLDSLLVGLSSRVRQIFFLSQLDGLTYPQIAAQLGLTVAQVQRAMGKAFS
VCYASRFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 6e-30 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_2363 YP_259470.1 sigma-70 family RNA polymerase sigma factor VFG1049 Protein 2e-30 50