Gene Information

Name : PFL_0246 (PFL_0246)
Accession : YP_257392.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Resistance
Product : amino-acid ABC transporter ATP-binding protein YecC
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1126
EC number : -
Position : 285774 - 286535 bp
Length : 762 bp
Strand : -
Note : identified by similarity to SP:P37774; match to protein family HMM PF00005

DNA sequence :
ATGATCGTGGTGGAAAAACTGACCAAGCAGTTCAAGGGCCAGACGGTGCTCAATGGCATCGACCTGGAGGTCAAGGAAGG
CGAAGTGGTCGCCATCATCGGCCCCAGCGGCTCGGGCAAGACCACCTTCCTGCGCTGCCTGAATTTTCTCGAAGAACCCA
CCAGCGGCCGCATCCGCATCGGTGACATCAGCATCGACAGCAGCATCCCCCTGAGCCATCAGCAGGGCCGGATCCGCCAG
TTGCGCCAGCAAGTGGGCTTCGTATTCCAGAACTTCAACCTGTTCCCCCACCGCACCGCACTGGAGAACGTCATCGAAGG
CCCGCTGGTGGTCAAGAAGACCCCGCGGGAGCAAGCCGTCGCCCTGGGTCGCGCGCTGCTGGCCAAGGTCGGGCTTGCAG
GTAAGGAAGATGCCTACCCCAGGCGCCTGTCCGGCGGCCAGCAACAGCGGGTAGCGATTGCCCGGGCCCTGGCCATGGAA
CCGCGGGTGATCCTGTTCGACGAACCCACCTCGGCCCTGGACCCGGAGCTGGTGGGCGAAGTACTGGCCACCATCCGCAG
CCTGGCCGAAGAGAAACGCACCATGGTCATCGTCACCCACGAGATGGGCTTTGCCCGGGACGTGGCCAACCGGGTGATCT
TCTTCGACAAGGGGGTGATCGTCGAACAGGGCGAAGCCAAGGCGCTGTTCGCCAACCCCCAGCACGAACGCACCCGACAG
TTTCTCAGCAAGTTCCTCGGCGCAAGCCACGCCCCCTTGTAG

Protein sequence :
MIVVEKLTKQFKGQTVLNGIDLEVKEGEVVAIIGPSGSGKTTFLRCLNFLEEPTSGRIRIGDISIDSSIPLSHQQGRIRQ
LRQQVGFVFQNFNLFPHRTALENVIEGPLVVKKTPREQAVALGRALLAKVGLAGKEDAYPRRLSGGQQQRVAIARALAME
PRVILFDEPTSALDPELVGEVLATIRSLAEEKRTMVIVTHEMGFARDVANRVIFFDKGVIVEQGEAKALFANPQHERTRQ
FLSKFLGASHAPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_0246 YP_257392.1 amino-acid ABC transporter ATP-binding protein YecC NC_012469.1.7686878. Protein 1e-25 42