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Name : fitA (PFL_2980) Accession : YP_260086.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type I secretion system ATPase FitA Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 3344936 - 3347077 bp Length : 2142 bp Strand : + Note : identified by similarity to GB:ABY91227.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846 DNA sequence : ATGACAGCGCTGTCTGCCCCATCATCCGCGGCCGATACGGCCGTTCACTCAGCCTTGGCCTGCTGCCATCTGCTGCTGCA ACTGACCCAGGAACGCGTACCGCAAGCCGCGGCCCCGCAATCCCTGGACCCTGACCCTTCGCGGGACCTGCGCCAGGCGG TCAGGGACTATGCACGCAACGCCGGTGTCGATCTTCGCCTGGAACGCCTGGCGCTGACCCGACTGACCCCAAAGATGCTG CCCCTTGCCTGGCGCAACCAGAGCGGCGAATTCATGCTGCTGGCGCGGCTCTCGGACACCCAGGCGCTGGTGCAGCGACC TTCAATGCCGACCCCGGACATGCTCGATCGCCTGCAGTTGGCCGAGCAGTGGAGCGGGGAGGTGATTCGCCTGCGCCAGA GCGGTTTGCGCTTTGATCTGTCCTGGTTCGTACCGGAGCTGCTGCGCCATCGGCGGATACTGGGCGAAGTGCTGCTGTGC TCGCTGTTGCTGCAGGTGCTGGCCCTGGCGACGCCGTTGTTCTTCCAGGCGGTGATGGACAAGGTCATGGTGCATCGGGC GCTGTCGACCCTCGACGTGCTGGTGATGACCCTGGTGGTGGTGGGCCTGTTCGAGGTGCTGCTCAAGGGTTTGCGCGAAT ACCTGGCGGCGCACACCGCCAACCGCATCGACATCGGCCTTGGGGTCAAGCTCTTGCGCCATCTGCTGGGCCTGCCGCTG CTGTACTTCAAGCAACGCCAGGTGGGGGCGATCATCACCCGGGTCCAGGAGCTGGACAGCATCCGCGAGTTCCTCACCGG TTCGCTGCTGACCCTGTGTGTCGACGTGGCCTTCACCCTGGTGTTTTTTGCGGTCATGGCCTGGATTTCCTGGCCGTTGA CCCTGCTGGTGCTGCTGACCCTGCCCCTGTATGCGCTGCTGGCCTGGTTCAGCACCGGCCCGCTGGAGAAGCGCATCGAG CGCCAGTTCTACAGCGCGGCGCGCAACACCGCCTTTCTCAATGAAAGCGTCAGCAGCAGCGAAACCATCAAGAGCCTGGC GGTGGAGCCGCGCATGCAGCGTCGCTGGGAGTCGCAGACGGCGCAGATGGTCGAGGCCGGGTTTGCCAGCCAGACCCTGG GCAGCGCCATCAGCCAGACCGTGATGCTGTTGCAGAAAGTCACGGCGGTGGCGGTGATCTGCTGGGGCGCTAGCCGGGTC ATCGACCTGCAGATGAGCATCGGCCAGTTGATTGCCTTCAACATGATGCTGTCCCACGTCAGCCAGCCCGTGGCCAAACT GATCGAGGTCTGGCAGCAGTTCGTCCGGGTGCGGGTGTCGGTGGACAAGCTGGGCGACATGCTCAACCTGCCGGTGGAGC AGGCCGAGGGGGATCTGCGCCCGGCACAGGCGTTGCGTGGCGAAGTGCGCATCGAACAGTTGGTGTTCCGCTACCGTCCG GAACTTGAGTGGGTGCTGCGCGGCCTGGACTTGCAGATCGCCGCGGGGCAGACCCTGGGCATCGTCGGGCCGTCCGGGTC CGGCAAGAGCACGCTGACCCGCTTGCTGCAGAAACTCTACACCCCCGATGGCGGGCGCATCCTGATCGACGGCTTGCCCC TGGATCAGTTGCAGCCGGCCTGGTTGCGTAGCCAGATTGGCGTGGTGCTCCAGGAAAACTACCTGTTCAACCGCAGCGTG CGCCACAACATCGCCCTGCGGCATCCCACGGCCTCCCTGGAAAGCGTGATCGCCGCGGCGCGCCTGGCCGGTGCCCATGA TTTCATCCTGCGCCTGCCCCTGGGCTACGACACGGTGCTGGCCGAAGCCGGCAGCTCGTTGTCCGGCGGCCAGCGGCAAC GCATCGCCATAGCCCGGGCACTGATGGGCGACCCGCGCATCCTGATTTTCGACGAAGCCACCAGCGCCCTGGATGACGAA TCCCAGGCGCTGATCCAGGACAACATGGCGAGCATCGCCCAGGGACGCACGGTGATCATCATTGCCCATCGCCTGTCTGC GGTACGGCATTGCCAACGCATCATCGCTCTGGAACAGGGGCGCATCAGTGAATCGGGCAGCCACCAGCAACTCTTGGCCA ACGGCGGTTGCTACTCGCGCCTGTGGGCGCTGCAACAGGCGCTGTGCAAGGAGGCGTCATGA Protein sequence : MTALSAPSSAADTAVHSALACCHLLLQLTQERVPQAAAPQSLDPDPSRDLRQAVRDYARNAGVDLRLERLALTRLTPKML PLAWRNQSGEFMLLARLSDTQALVQRPSMPTPDMLDRLQLAEQWSGEVIRLRQSGLRFDLSWFVPELLRHRRILGEVLLC SLLLQVLALATPLFFQAVMDKVMVHRALSTLDVLVMTLVVVGLFEVLLKGLREYLAAHTANRIDIGLGVKLLRHLLGLPL LYFKQRQVGAIITRVQELDSIREFLTGSLLTLCVDVAFTLVFFAVMAWISWPLTLLVLLTLPLYALLAWFSTGPLEKRIE RQFYSAARNTAFLNESVSSSETIKSLAVEPRMQRRWESQTAQMVEAGFASQTLGSAISQTVMLLQKVTAVAVICWGASRV IDLQMSIGQLIAFNMMLSHVSQPVAKLIEVWQQFVRVRVSVDKLGDMLNLPVEQAEGDLRPAQALRGEVRIEQLVFRYRP ELEWVLRGLDLQIAAGQTLGIVGPSGSGKSTLTRLLQKLYTPDGGRILIDGLPLDQLQPAWLRSQIGVVLQENYLFNRSV RHNIALRHPTASLESVIAAARLAGAHDFILRLPLGYDTVLAEAGSSLSGGQRQRIAIARALMGDPRILIFDEATSALDDE SQALIQDNMASIAQGRTVIIIAHRLSAVRHCQRIIALEQGRISESGSHQQLLANGGCYSRLWALQQALCKEAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 1e-115 | 47 |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 8e-116 | 47 |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 8e-116 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fitA | YP_260086.1 | type I secretion system ATPase FitA | VFG1269 | Protein | 8e-118 | 51 |
| fitA | YP_260086.1 | type I secretion system ATPase FitA | VFG0841 | Protein | 5e-112 | 47 |
| fitA | YP_260086.1 | type I secretion system ATPase FitA | VFG1557 | Protein | 4e-116 | 47 |
| fitA | YP_260086.1 | type I secretion system ATPase FitA | VFG1501 | Protein | 4e-116 | 47 |
| fitA | YP_260086.1 | type I secretion system ATPase FitA | VFG0907 | Protein | 5e-116 | 47 |
