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Name : fitC (PFL_2982) Accession : YP_260088.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Virulence Product : type I secretion system ATPase FitC Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 3348465 - 3350624 bp Length : 2160 bp Strand : + Note : See Pechy-Tarr et. al. (PMID: 18484997) for more information.; identified by similarity to GB:ABY91229.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846 DNA sequence : ATGACCCGCGCTTTCGATGCCGCTTCTGAACCCTCACCGACAATGCTCGACACCGGCCTGCACGCCCTAGCCTGGGCCGC CCGGCGCTTTGACCTGAGCATCAGCGTGGCGCAACTGACTCACCGCCTGGGACGGGTTGAAGGTCCGGCCGACAGCCTTG ACCTGCGGCGCTGCGCCGGCTGGATCGGCCTGCGCGCACGGGCAGTGCAAAGCCGGGTGCAACGCTTGCATCACCTGCCG CTGCCGGCGTTGCTGGACACCACGCGGGGCTGGGCGGTGCTGGACGCGGTGGAGGGCGACCGGGTCCGGGTGTTCTGGCC GCTGCAGGGGCAATGCCAGACCCTGTCGCGCCAGGAGCTGGCGACGCTCTGGCAAGGCCATGATCAGGGACAGGGAGAGG TGTTGCTGCTGGCCGAGCGGCATGTGCAGCTGAAGACGGGTGGTTTCGGCGTCTCCTGGTTCCTGCCGTCGATCCTCAAG CATGGGCGCCAGTTTCGCAGCGTGCTGCTGGTGTCGCTGATGCTGCAAGGCGTAGCGCTGGTCACGCCGCTGCTGTTCGA GAACATCATCGACCGGGTTCTGGTCAGTCGCGGCCTGTCGAGCCTGCAAGTGCTGGGGATCGCCATGCTGGCCCTGGCGC TGTTCGAGCCCTTGTTCGGCCTGTTGCGGTCCTGGCTGTTCAGCAATGTGGCGAGCAAGATCAACGCCGAGCTGTCCGCG CGCCTGTACCAGCATCTGATCCAGTTGCCGCTGGGTTATTTCCAGCGGCGCCAGAGCGGCGAGATCATCGCCCGGGTCGG TGAGATGCAACAGATCCGCCAGTTTCTTACCGGCTCGGCCTTGACCCTGGTGCTGGACCTGGCGTTCTGCGGGTTGTTCA TCGCCGTGATGTACAGCTACGCACCGCTGCTGACCTGGGTGGTTGTGGGCTCCCTGGCCCTGTATTTCCTCTTCTGGCTG TGCGTGGGCCCCTTGCTGCGCAGCCGGGCCTTGCGCGAATACGAGTTGAATGCGGCCAACACGGCGTTTCTCACCGAGAC CGTGACCGGCATCGAGACTATCAAGACCGGGGCCATCGAAAGCGCCTTCCAGCAGCAGTGGCAGCGCCAGCTGGCGGCTT ATGTGCGTGCGGCGTTCCACACCCGCATCGTCGGGATCTGGGCCGGGCAGGGCATCGGCCTGATCCAGAAGCTGACCGCT GCGCTGTTGCTGTGGTGGGGCGTGATGCTGGTGCTGGATGGCCAGTTGAGCCCCGGCCAACTGGTGGCCTTCAACATGCT GGCCGGGCATGTGGTGGAGCCGATCCTGCGTCTGGCCCAGGTCTGGCAGGACTTCCAGCACACGCTGATTTCCCTGCGCC GCCTGGGGGACATTCTCGACAGCGACTGTGAAAGCGGCAGCGGTGGCCTGGCCTCGGTGCCAGCGTTGCAGGGCGGGGTG AGCTTCCAGGGGGTGCGTTTTCGCTACGAGGAAGACGGCCAGGAGGTGCTGCGCCAGCTGGATCTGGAGATCCAGCCGGG CGAGTTCGTCGGCATCACCGGGCCTTCCGGTTCCGGCAAATCGACCCTGACCCGCCTGCTGCAGCGCCTCTATGTGCCCC AGCACGGCCGGGTGCTGGTGGACGGCATCGACCTGGCCATCGCCGATCCGGTGGCCCTGCGCCGCAACATGAGCGTGGTG CTCCAGGAAAGCGTGTTGTTCGCCGGCAGCGTTGCCGAGAACATCCGCCTGTGCCGGCCTCAAGCCAGCGACGCCGAGGT GCGGCACGCCGCCGGTCTGGCCGGGGCGGCGTCCTTTATCGAGGCCCTGGCCCAGGGCTACGAGACCGAGGTGGGCGAGC GTGGCGGCCAGCTCTCCGGCGGCCAGCGTCAACGCATTGCCCTGGCCCGGGCCCTGTTGACCAACCCCGGCATCCTGTTG CTGGACGAAGCCACCAGTGCCCTGGACTACGAGTCGGAAGCGGCGGTGATGGCCAACCTGCAGGGCATCGTCCACGGCCG CACGGTGATCAGCGTCGCCCATCGCCTCAATACCCTGCGCCATGCGGACCGGATTCTGGTCATCGATCAGGGCCGGGTGC TCGAACAAGGCACACACCAACAGCTGCTCGCTCTGGACGGGTTGTATGCCCGGCAGTGGGCGCTGCAGATGAAGGACTGA Protein sequence : MTRAFDAASEPSPTMLDTGLHALAWAARRFDLSISVAQLTHRLGRVEGPADSLDLRRCAGWIGLRARAVQSRVQRLHHLP LPALLDTTRGWAVLDAVEGDRVRVFWPLQGQCQTLSRQELATLWQGHDQGQGEVLLLAERHVQLKTGGFGVSWFLPSILK HGRQFRSVLLVSLMLQGVALVTPLLFENIIDRVLVSRGLSSLQVLGIAMLALALFEPLFGLLRSWLFSNVASKINAELSA RLYQHLIQLPLGYFQRRQSGEIIARVGEMQQIRQFLTGSALTLVLDLAFCGLFIAVMYSYAPLLTWVVVGSLALYFLFWL CVGPLLRSRALREYELNAANTAFLTETVTGIETIKTGAIESAFQQQWQRQLAAYVRAAFHTRIVGIWAGQGIGLIQKLTA ALLLWWGVMLVLDGQLSPGQLVAFNMLAGHVVEPILRLAQVWQDFQHTLISLRRLGDILDSDCESGSGGLASVPALQGGV SFQGVRFRYEEDGQEVLRQLDLEIQPGEFVGITGPSGSGKSTLTRLLQRLYVPQHGRVLVDGIDLAIADPVALRRNMSVV LQESVLFAGSVAENIRLCRPQASDAEVRHAAGLAGAASFIEALAQGYETEVGERGGQLSGGQRQRIALARALLTNPGILL LDEATSALDYESEAAVMANLQGIVHGRTVISVAHRLNTLRHADRILVIDQGRVLEQGTHQQLLALDGLYARQWALQMKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 2e-135 | 46 |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 1e-135 | 46 |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 1e-135 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fitC | YP_260088.1 | type I secretion system ATPase FitC | VFG0841 | Protein | 2e-128 | 48 |
| fitC | YP_260088.1 | type I secretion system ATPase FitC | VFG1269 | Protein | 3e-137 | 46 |
| fitC | YP_260088.1 | type I secretion system ATPase FitC | VFG1501 | Protein | 7e-136 | 46 |
| fitC | YP_260088.1 | type I secretion system ATPase FitC | VFG0907 | Protein | 8e-136 | 46 |
| fitC | YP_260088.1 | type I secretion system ATPase FitC | VFG1557 | Protein | 7e-136 | 46 |
