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Name : PFL_3300 (PFL_3300) Accession : YP_260405.1 Strain : Pseudomonas protegens Pf-5 Genome accession: NC_004129 Putative virulence/resistance : Unknown Product : membrane-bound lytic murein transglycosylase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1388 EC number : 4.2.2.- Position : 3807110 - 3808537 bp Length : 1428 bp Strand : + Note : identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474 DNA sequence : ATGTCGTCATCTATTCGTTATTCCATCAGTTCAGACGCATTGACGCGCTTGGCCCAGGCCATCGCGGTAGCTGTGTCAGC GACTCTTGCGGGCTGCCAAAGCACCGGCCATGCCCCGCAGAGCGACGCGACACACACACAGAATTTCAACGCCCGCATCA AGCAGAAACCCATCTGGCTGAGCAACCAGCCCAGCCCGCAAGTACCCCAGGACGTCTGGGAACGCATGCGCCAGGGGTTC CAATTGCAAGAAGGCCTGGGCGTCAACCCGCGTATTGAACAGCAGCGCCTGTGGTTCGCCAGCAACCCTTCCTTCCTGGA AAATGCCGGCGAGCGCGGCAGCCTTTATATCCACTACATCGTCGAGCGTCTCGAAGAGCGCAACATGCCGCTGGAACTGG CCCTGCTGCCGGTCATCGAAAGCGCCTACAACCCCCTGGCCTATTCCCGGGCCGATGCGGTGGGGCTGTGGCAGTTCGTC CCGGCCACCGGGCGCTACTTCAACCTGCGCCAGACCCGCTTCTACGATGGCCGCCGCGACATCACCGCGTCCACCACCGC GGCCATGGACTACCTGAGCCGCCTGCACGACATGTTCAACGGCGACTGGCTGCTGGCACTGGCCGCCTACAACGCCGGTG AAGGCACGGTGAGCCGGGCCATCGAGCGCAATGAAAAGCTCGGCCTGCCCACCGACTACTGGAACCTGCCGCTGCCGGCC GAGACCCAGGCCTATGTGCCCAAGCTGCTGGCCCTGTCCCAGGTGGTGCTGGCCCCGCAGGCCTACGGCGTGAACCTCAA CCCGATTGCCAACGAACCCTATTTCCAGGTGGTGGAGATCAACCAGCGCATGGACCTGTCCAAGGTCGCGGCGGTGGCCA ACATCGACGAGGACGAGCTGTTCCAGCTCAACCCGGCGTTCAAGCAGCGCACCACCATCGACGGCCCCCAGCACCTGCTG GTTCCGACTTCCAAGGCACAGTTGCTGACCACCAGCCTGTCCACCATGAAACCCGAAGAACTGATCAGCAAGCGCTCCCT CAAACCGGTCTTCGACCGCGACGAGGGGCGTGATTCGCTGCGGGCCAAGCGCATCTACCGGGTCAAGAATGGCGACAACC TGACCCTCATTGCCAAGGCCAACAAGGTCGACGTCCAGGACCTGCAGCGCTGGAACAAGCTCAGCGGCAAGAACCTCAAG GTCGGCCAGACGCTGGTGATGCAGGACACCCGCAAGGTGGCCAGCAAGAAAACCAGCCTGGCCAGCAACAAGAAGAAGTC GACTCAGTACAAGGTCAAGCAGGGCGACTCGCTGTACATGGTGGCCAAGCGCTTCAATGTCGAGATGCAGCACCTCAAGC GCTGGAACCCCCGCGCGGCCCAGGCCCTCAAGCCCGGCCAGATGCTGACGGTGTACCTGCCGCACTGA Protein sequence : MSSSIRYSISSDALTRLAQAIAVAVSATLAGCQSTGHAPQSDATHTQNFNARIKQKPIWLSNQPSPQVPQDVWERMRQGF QLQEGLGVNPRIEQQRLWFASNPSFLENAGERGSLYIHYIVERLEERNMPLELALLPVIESAYNPLAYSRADAVGLWQFV PATGRYFNLRQTRFYDGRRDITASTTAAMDYLSRLHDMFNGDWLLALAAYNAGEGTVSRAIERNEKLGLPTDYWNLPLPA ETQAYVPKLLALSQVVLAPQAYGVNLNPIANEPYFQVVEINQRMDLSKVAAVANIDEDELFQLNPAFKQRTTIDGPQHLL VPTSKAQLLTTSLSTMKPEELISKRSLKPVFDRDEGRDSLRAKRIYRVKNGDNLTLIAKANKVDVQDLQRWNKLSGKNLK VGQTLVMQDTRKVASKKTSLASNKKKSTQYKVKQGDSLYMVAKRFNVEMQHLKRWNPRAAQALKPGQMLTVYLPH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAT96217.1 | membrane-bound lytic murein transglycosylase-like protein | Not tested | T-PAI | Protein | 2e-81 | 51 |
| unnamed | AAT96163.1 | membrane-bound lytic murein transglycosylase-like protein | Not tested | T-PAI | Protein | 2e-81 | 50 |
