Gene Information

Name : PFL_3313 (PFL_3313)
Accession : YP_260418.1
Strain : Pseudomonas protegens Pf-5
Genome accession: NC_004129
Putative virulence/resistance : Virulence
Product : ECF family RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3825609 - 3826142 bp
Length : 534 bp
Strand : +
Note : identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937

DNA sequence : 
TTGCCCTCCACGCCTCTCGCCAGCCCGGACTCGGTCCACAGCCTCTACGATGCCCATCACCGCTGGCTCTACGAGTTGTT
GCGCCGGCGCCTGAATCACGCCTGGGACGCTGCCGACCTGGCCCACGACATCTTTGTCCGGGTGCTCAAGCGCCCGCCGG
TGCTGCGTGACGAGGTCCACCAGCGTTCCTACCTGGCCACCGTGGCCCGGGGCCTGTGCATCGACCACTGGCGGCGCCGG
CAACTGGAGCAGGCCTGGCTGCAGGCGCTGGCTGCACGCCCGCAGGCGGTGCAACCCTCGGCGGAGCAGCAGGCAATCAT
TGTCGAGACCCTGTACGAAGTGGACGCCATGCTCAGCCGCCTGCCGGCCAAGGTGCGCTCGGCCTTCATCCTCGCTCAAC
TGCACGGCCGGCCCTACCAGGCCATCGCCGATGAGCTGGGGGTATCGGAGCGCATGGTGAAGAAGTACCTGGCCCAGGCC
CTGCTGCATTGCGCACTGCTGGAGGCCGAACTCGACGGCCTGCTGGTGGACTGA

Protein sequence : 
MPSTPLASPDSVHSLYDAHHRWLYELLRRRLNHAWDAADLAHDIFVRVLKRPPVLRDEVHQRSYLATVARGLCIDHWRRR
QLEQAWLQALAARPQAVQPSAEQQAIIVETLYEVDAMLSRLPAKVRSAFILAQLHGRPYQAIADELGVSERMVKKYLAQA
LLHCALLEAELDGLLVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 5e-17 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PFL_3313 YP_260418.1 ECF family RNA polymerase sigma factor VFG1049 Protein 2e-17 44